atomea 0.0.0.post159

Extensible schema for atomistic simulations and calculations.

atomea

Extensible schema for atomistic simulations and calculations.

Documentation

Overview

Atomea is a Python package designed to simplify and standardize the setup and data management for atomistic simulations and calculations. It leverages the power of Pydantic for schema definition and Jinja2 templates for input file generation, making it easy to automate, document, and prepare input files for various computational chemistry and biology tools.

Key features

• Extensible Schema Definition: Easily define schemas for various computational packages using Pydantic.
• Automated Input File Preparation: Generate input files with Jinja2 templates to ensure consistency and reproducibility.
• Data Digestion: Convert raw output files into optimized storage formats (e.g., Zarr) with a consistent interface.
• YAML Integration: Save and load configurations and data in YAML format for easy sharing and reproducibility.

Installation

You can install atomea via pip:

pip install atomea

Deploying

We use bump-my-version to release a new version. This will create a git tag that is used by poetry-dynamic-version to generate version strings and update CHANGELOG.md.

For example, to bump the minor version you would run the following command.

poetry run bump-my-version bump minor

After releasing a new version, you need to push and include all tags.

git push --follow-tags

License

This project is released under the Apache-2.0 License as specified in LICENSE.md.