bedmess
bedmess is a tool used to standardize genomics/epigenomics metadata based on a schema chosen by the user ( eg. ENCODE, FAIRTRACKS).
Presently, bedmess only provides standardization according to the ENCODE schema.
You can install the attribute_standardizer by:
pip install attribute-standardizer
Usage
Using Python, this is how you can run attribute_standardizer :
from attribute_standardizer.attribute_standardizer import attr_standardizer
attr_standardizer(pep=/path/to/pep, schema="ENCODE")
You can use the format provided in the trial.py script in this repository as a reference.
1 maintainer
Metadata
1 maintainer
Release files for attribute-standardizer 0.1.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| attribute_standardizer-0.1.1.tar.gz | 7.4 kB | Without provenance | Details for attribute_standardizer-0.1.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
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| attribute_standardizer-0.1.1-py3-none-any.whl | Python 3 | none | any | Details for attribute_standardizer-0.1.1-py3-none-any.whl |
Total release size: 15.4 kB
Release files / attribute_standardizer-0.1.1.tar.gz
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Release files / attribute_standardizer-0.1.1-py3-none-any.whl
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| Tags | Python 3 |
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Security for attribute-standardizer 0.1.1
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