Wrapper around awk to use as a dataframe implementation in python

Project description

awk_dataframe

This library is intended to use for fast and low RAM memory consumption of very large .csv files. It works by accumulating a sequence of awk commands that will be executed through pipes in bash when the actual values of the dataframe are to be consumed.

First things first

This is an wrapper around AWK for its use as a dataframe implementation, therefore, it won't work unless you are using a Linux distribution that can run BASH and GAWK. It could work on a macOS but I haven't tested it. I am personally running Ubuntu 22.04. It also compiles two C++ files (to read and save) and needs g++ in the system in order to compile them.

It will also not work if your regional settings use the comma as the decimal separator. One way to change this is to set the regional settings to the UK as follows:

sudo update-locale LC_NUMERIC="en_GB.UTF-8"

and then logout of your system.

Disk usage

Not only this library runs directly from the hard drive trying to avoid RAM limitations which will degrade your hard drive. It also stores temporary files into the ~/.tmp folder. Altough they should be deleted automatically, please check from time to time, since there might be some bug that leaves files behind. Also, although it will be automatically created, make sure that it already exists in your disk, in order to avoid failures at creation time due to permissions.

Most commands do not take time, but be advised that df.shape(), print(df), df.head(), df.values(), df.to_pandas(), df.to_npd() and df.to_csv(path) will run the full set of commands and might take time, avoid using them as much as possible. The best implementation would be to generate all conditions for subsetting and then either going to a pandas/numpy_dataframe object if you want to further manipulate in RAM or using df.to_csv(path) to save the results to the hard drive.

Authors and acknowledgment

Idea and implementation by Carlos Molinero.

License

MIT license.

Project status

Currently this is an early implementation, meaning that it is in a very unstable state, and the syntax might change and bugs may arise. I do not recommend installing it, I am publishing it for my personal use.

Usage:

In the following lines I paste examples of the main commands, as some sort of documentation until a more complete documentation is available.

INIT

import os
import sys
import numpy as np
import numpy_dataframe as npd
import pandas as pd
import awk_dataframe as ad
import importlib
import time
import random
import string

Functions

def get_random_string(length):
    # thanks to https://pynative.com/python-generate-random-string/
    # choose from all lowercase letter
    letters = string.ascii_lowercase
    result_str = ''.join(random.choice(letters) for i in range(length))
    return result_str

create test csv

n = 20
names = np.array([get_random_string(5) for x in range(5)])

t = npd.DataFrame()
t.values = np.random.rand(n)
t.some_ints = np.floor(np.random.rand(n)*50).astype(int)
t.name = names[np.random.choice(range(5),n)]

path = os.path.expanduser("~") + "/.tmp/example.csv"
t.to_csv(path)

Gawk dataframe

contruct object / read csv

path = os.path.expanduser("~") + "/.tmp/example.csv"
df = ad.read_csv(path)

path = os.path.expanduser("~") + "/.tmp/example.csv"
df = ad.DataFrame()
df.read_csv(path)

select rows/columns

df[0:10,:]

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd
0.06832888693954564,31,bgmqd
0.717887788740719,44,mlyas
0.6559538612897098,49,efcsm
0.08927654448880817,44,tcbtr
0.7338088959472877,36,tcbtr

df.some_ints

df["some_ints"]

df[:,"some_ints"]

df[:,["some_ints","name"]]

some_ints,name
21,mlyas
32,efcsm
24,tcbtr
44,efcsm
2,bgmqd
31,bgmqd
44,mlyas
49,efcsm
44,tcbtr
36,tcbtr
9,mlyas
11,lmqgd
12,bgmqd
31,mlyas
7,efcsm
40,tcbtr
26,mlyas
38,efcsm
35,mlyas
26,mlyas

df[:,1:2]

df[:,1:]

some_ints,name
21,mlyas
32,efcsm
24,tcbtr
44,efcsm
2,bgmqd
31,bgmqd
44,mlyas
49,efcsm
44,tcbtr
36,tcbtr
9,mlyas
11,lmqgd
12,bgmqd
31,mlyas
7,efcsm
40,tcbtr
26,mlyas
38,efcsm
35,mlyas
26,mlyas

df[:10,:]

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd
0.06832888693954564,31,bgmqd
0.717887788740719,44,mlyas
0.6559538612897098,49,efcsm
0.08927654448880817,44,tcbtr
0.7338088959472877,36,tcbtr

df[3,2]

name
efcsm

df[3,:]

values,some_ints,name
0.7678670658611503,44,efcsm

df[:,1]

df[[0,3],1]

some_ints
21
44

df[:,[0,1]]

values,some_ints
0.8633713864104114,21
0.7797461486214806,32
0.9415640935512127,24
0.7678670658611503,44
0.8223095493965592,2
0.06832888693954564,31
0.717887788740719,44
0.6559538612897098,49
0.08927654448880817,44
0.7338088959472877,36
0.701592457357365,9
0.04338298448626843,11
0.3297427254572507,12
0.1011755876260031,31
0.8235585667750851,7
0.5829664850991141,40
0.14016453615592928,26
0.43436632265162967,38
0.4097725083991255,35
0.6379834519420476,26

df[range(5),:]

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd

df.get_rows(range(10))

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd
0.06832888693954564,31,bgmqd
0.717887788740719,44,mlyas
0.6559538612897098,49,efcsm
0.08927654448880817,44,tcbtr
0.7338088959472877,36,tcbtr

df.get_cols(range(2))

values,some_ints
0.8633713864104114,21
0.7797461486214806,32
0.9415640935512127,24
0.7678670658611503,44
0.8223095493965592,2
0.06832888693954564,31
0.717887788740719,44
0.6559538612897098,49
0.08927654448880817,44
0.7338088959472877,36
0.701592457357365,9
0.04338298448626843,11
0.3297427254572507,12
0.1011755876260031,31
0.8235585667750851,7
0.5829664850991141,40
0.14016453615592928,26
0.43436632265162967,38
0.4097725083991255,35
0.6379834519420476,26

names, shape, head

df.names()

array(['values', 'some_ints', 'name'], dtype='<U9')

df.shape()

array([20,  3])

df.head()

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd
0.06832888693954564,31,bgmqd
0.717887788740719,44,mlyas
0.6559538612897098,49,efcsm
0.08927654448880817,44,tcbtr
0.7338088959472877,36,tcbtr
0.701592457357365,9,mlyas
0.04338298448626843,11,lmqgd

df.head(5)

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd
0.06832888693954564,31,bgmqd
0.717887788740719,44,mlyas

where

df.where("values < 0.8 && values > .6")

gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name
0.7797461486,32,efcsm
0.7678670659,44,efcsm
0.7178877887,44,mlyas
0.6559538613,49,efcsm
0.7338088959,36,tcbtr
0.7015924574,9,mlyas
0.6379834519,26,mlyas

df.where("""  name == "mlyas"  """)

gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name
0.8633713864104114,21,mlyas
0.717887788740719,44,mlyas
0.701592457357365,9,mlyas
0.1011755876260031,31,mlyas
0.14016453615592928,26,mlyas
0.4097725083991255,35,mlyas
0.6379834519420476,26,mlyas

df.where("""  name in ["efcsm","tcbtr"]  """)

gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.6559538612897098,49,efcsm
0.08927654448880817,44,tcbtr
0.7338088959472877,36,tcbtr
0.8235585667750851,7,efcsm
0.5829664850991141,40,tcbtr
0.43436632265162967,38,efcsm

unique

df.unique("name")

name
lmqgd
efcsm
mlyas
bgmqd
tcbtr

add column

df_with_new_column = df.add_column("new_column")
df_with_new_column

values,some_ints,name,new_column
0.8633713864104114,21,mlyas,
0.7797461486214806,32,efcsm,
0.9415640935512127,24,tcbtr,
0.7678670658611503,44,efcsm,
0.8223095493965592,2,bgmqd,
0.06832888693954564,31,bgmqd,
0.717887788740719,44,mlyas,
0.6559538612897098,49,efcsm,
0.08927654448880817,44,tcbtr,
0.7338088959472877,36,tcbtr,
0.701592457357365,9,mlyas,
0.04338298448626843,11,lmqgd,
0.3297427254572507,12,bgmqd,
0.1011755876260031,31,mlyas,
0.8235585667750851,7,efcsm,
0.5829664850991141,40,tcbtr,
0.14016453615592928,26,mlyas,
0.43436632265162967,38,efcsm,
0.4097725083991255,35,mlyas,
0.6379834519420476,26,mlyas,

modify

df.modify("values = values + some_ints * 3")

gawk: warning: escape sequence `\/' treated as plain `/'
gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name
63.86337139,21,mlyas
96.77974615,32,efcsm
72.94156409,24,tcbtr
132.7678671,44,efcsm
6.822309549,2,bgmqd
93.06832889,31,bgmqd
132.7178878,44,mlyas
147.6559539,49,efcsm
132.0892765,44,tcbtr
108.7338089,36,tcbtr
27.70159246,9,mlyas
33.04338298,11,lmqgd
36.32974273,12,bgmqd
93.10117559,31,mlyas
21.82355857,7,efcsm
120.5829665,40,tcbtr
78.14016454,26,mlyas
114.4343663,38,efcsm
105.4097725,35,mlyas
78.63798345,26,mlyas

The previous operation does not modify the values in df

df

values,some_ints,name
0.8633713864104114,21,mlyas
0.7797461486214806,32,efcsm
0.9415640935512127,24,tcbtr
0.7678670658611503,44,efcsm
0.8223095493965592,2,bgmqd
0.06832888693954564,31,bgmqd
0.717887788740719,44,mlyas
0.6559538612897098,49,efcsm
0.08927654448880817,44,tcbtr
0.7338088959472877,36,tcbtr
0.701592457357365,9,mlyas
0.04338298448626843,11,lmqgd
0.3297427254572507,12,bgmqd
0.1011755876260031,31,mlyas
0.8235585667750851,7,efcsm
0.5829664850991141,40,tcbtr
0.14016453615592928,26,mlyas
0.43436632265162967,38,efcsm
0.4097725083991255,35,mlyas
0.6379834519420476,26,mlyas

You need to assign it in order for the modifications to be "saved"

df_mod = df.modify("values = values + some_ints * 3")
df_mod

gawk: warning: escape sequence `\/' treated as plain `/'
gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name
63.86337139,21,mlyas
96.77974615,32,efcsm
72.94156409,24,tcbtr
132.7678671,44,efcsm
6.822309549,2,bgmqd
93.06832889,31,bgmqd
132.7178878,44,mlyas
147.6559539,49,efcsm
132.0892765,44,tcbtr
108.7338089,36,tcbtr
27.70159246,9,mlyas
33.04338298,11,lmqgd
36.32974273,12,bgmqd
93.10117559,31,mlyas
21.82355857,7,efcsm
120.5829665,40,tcbtr
78.14016454,26,mlyas
114.4343663,38,efcsm
105.4097725,35,mlyas
78.63798345,26,mlyas

Modify accepts conditional equations, and its results are 1 for true and 0 for false, which allows to construct functions such as sign() or abs(), etc as an example:

df_mod = df_with_new_column.modify("new_column = values - .5")
df_mod

gawk: warning: escape sequence `\/' treated as plain `/'
gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name,new_column
0.8633713864104114,21,mlyas,0.3633713864
0.7797461486214806,32,efcsm,0.2797461486
0.9415640935512127,24,tcbtr,0.4415640936
0.7678670658611503,44,efcsm,0.2678670659
0.8223095493965592,2,bgmqd,0.3223095494
0.06832888693954564,31,bgmqd,-0.4316711131
0.717887788740719,44,mlyas,0.2178877887
0.6559538612897098,49,efcsm,0.1559538613
0.08927654448880817,44,tcbtr,-0.4107234555
0.7338088959472877,36,tcbtr,0.2338088959
0.701592457357365,9,mlyas,0.2015924574
0.04338298448626843,11,lmqgd,-0.4566170155
0.3297427254572507,12,bgmqd,-0.1702572745
0.1011755876260031,31,mlyas,-0.3988244124
0.8235585667750851,7,efcsm,0.3235585668
0.5829664850991141,40,tcbtr,0.0829664851
0.14016453615592928,26,mlyas,-0.3598354638
0.43436632265162967,38,efcsm,-0.06563367735
0.4097725083991255,35,mlyas,-0.0902274916
0.6379834519420476,26,mlyas,0.1379834519

now, let's get the absolute value of new column and put it in a new column

df_mod_2 = df_mod.add_column("abs_new_column").modify("abs_new_column = new_column * ((new_column >= 0) * 2 - 1)")
df_mod_2

gawk: warning: escape sequence `\/' treated as plain `/'
gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name,new_column,abs_new_column
0.8633713864104114,21,mlyas,0.3633713864,0.3633713864
0.7797461486214806,32,efcsm,0.2797461486,0.2797461486
0.9415640935512127,24,tcbtr,0.4415640936,0.4415640936
0.7678670658611503,44,efcsm,0.2678670659,0.2678670659
0.8223095493965592,2,bgmqd,0.3223095494,0.3223095494
0.06832888693954564,31,bgmqd,-0.4316711131,0.4316711131
0.717887788740719,44,mlyas,0.2178877887,0.2178877887
0.6559538612897098,49,efcsm,0.1559538613,0.1559538613
0.08927654448880817,44,tcbtr,-0.4107234555,0.4107234555
0.7338088959472877,36,tcbtr,0.2338088959,0.2338088959
0.701592457357365,9,mlyas,0.2015924574,0.2015924574
0.04338298448626843,11,lmqgd,-0.4566170155,0.4566170155
0.3297427254572507,12,bgmqd,-0.1702572745,0.1702572745
0.1011755876260031,31,mlyas,-0.3988244124,0.3988244124
0.8235585667750851,7,efcsm,0.3235585668,0.3235585668
0.5829664850991141,40,tcbtr,0.0829664851,0.0829664851
0.14016453615592928,26,mlyas,-0.3598354638,0.3598354638
0.43436632265162967,38,efcsm,-0.06563367735,0.06563367735
0.4097725083991255,35,mlyas,-0.0902274916,0.0902274916
0.6379834519420476,26,mlyas,0.1379834519,0.1379834519

Modify accepts conditions, there are two ways:

df_mod_2.modify("values = 0",condition = "new_column < 0")

gawk: warning: escape sequence `\/' treated as plain `/'
gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name,new_column,abs_new_column
0.8633713864104114,21,mlyas,0.3633713864,0.3633713864
0.7797461486214806,32,efcsm,0.2797461486,0.2797461486
0.9415640935512127,24,tcbtr,0.4415640936,0.4415640936
0.7678670658611503,44,efcsm,0.2678670659,0.2678670659
0.8223095493965592,2,bgmqd,0.3223095494,0.3223095494
0,31,bgmqd,-0.4316711131,0.4316711131
0.717887788740719,44,mlyas,0.2178877887,0.2178877887
0.6559538612897098,49,efcsm,0.1559538613,0.1559538613
0,44,tcbtr,-0.4107234555,0.4107234555
0.7338088959472877,36,tcbtr,0.2338088959,0.2338088959
0.701592457357365,9,mlyas,0.2015924574,0.2015924574
0,11,lmqgd,-0.4566170155,0.4566170155
0,12,bgmqd,-0.1702572745,0.1702572745
0,31,mlyas,-0.3988244124,0.3988244124
0.8235585667750851,7,efcsm,0.3235585668,0.3235585668
0.5829664850991141,40,tcbtr,0.0829664851,0.0829664851
0,26,mlyas,-0.3598354638,0.3598354638
0,38,efcsm,-0.06563367735,0.06563367735
0,35,mlyas,-0.0902274916,0.0902274916
0.6379834519420476,26,mlyas,0.1379834519,0.1379834519

conditional_equation = ad.Conditional_equation()
conditional_equation.condition = "new_column < 0"
conditional_equation.equation = "values = 0"
df_mod_2.modify(conditional_equation)

gawk: warning: escape sequence `\/' treated as plain `/'
gawk: warning: escape sequence `\/' treated as plain `/'





values,some_ints,name,new_column,abs_new_column
0.8633713864104114,21,mlyas,0.3633713864,0.3633713864
0.7797461486214806,32,efcsm,0.2797461486,0.2797461486
0.9415640935512127,24,tcbtr,0.4415640936,0.4415640936
0.7678670658611503,44,efcsm,0.2678670659,0.2678670659
0.8223095493965592,2,bgmqd,0.3223095494,0.3223095494
0,31,bgmqd,-0.4316711131,0.4316711131
0.717887788740719,44,mlyas,0.2178877887,0.2178877887
0.6559538612897098,49,efcsm,0.1559538613,0.1559538613
0,44,tcbtr,-0.4107234555,0.4107234555
0.7338088959472877,36,tcbtr,0.2338088959,0.2338088959
0.701592457357365,9,mlyas,0.2015924574,0.2015924574
0,11,lmqgd,-0.4566170155,0.4566170155
0,12,bgmqd,-0.1702572745,0.1702572745
0,31,mlyas,-0.3988244124,0.3988244124
0.8235585667750851,7,efcsm,0.3235585668,0.3235585668
0.5829664850991141,40,tcbtr,0.0829664851,0.0829664851
0,26,mlyas,-0.3598354638,0.3598354638
0,38,efcsm,-0.06563367735,0.06563367735
0,35,mlyas,-0.0902274916,0.0902274916
0.6379834519420476,26,mlyas,0.1379834519,0.1379834519

A future update of the library will allow to include several conditional equations in the same modify statement

add_index

df_mod = df.add_index()
df_mod

index,values,some_ints,name
0,0.8633713864104114,21,mlyas
1,0.7797461486214806,32,efcsm
2,0.9415640935512127,24,tcbtr
3,0.7678670658611503,44,efcsm
4,0.8223095493965592,2,bgmqd
5,0.06832888693954564,31,bgmqd
6,0.717887788740719,44,mlyas
7,0.6559538612897098,49,efcsm
8,0.08927654448880817,44,tcbtr
9,0.7338088959472877,36,tcbtr
10,0.701592457357365,9,mlyas
11,0.04338298448626843,11,lmqgd
12,0.3297427254572507,12,bgmqd
13,0.1011755876260031,31,mlyas
14,0.8235585667750851,7,efcsm
15,0.5829664850991141,40,tcbtr
16,0.14016453615592928,26,mlyas
17,0.43436632265162967,38,efcsm
18,0.4097725083991255,35,mlyas
19,0.6379834519420476,26,mlyas

sort_by

df_mod.sort_by("values")

index,values,some_ints,name
11,0.04338298448626843,11,lmqgd
5,0.06832888693954564,31,bgmqd
8,0.08927654448880817,44,tcbtr
13,0.1011755876260031,31,mlyas
16,0.14016453615592928,26,mlyas
12,0.3297427254572507,12,bgmqd
18,0.4097725083991255,35,mlyas
17,0.43436632265162967,38,efcsm
15,0.5829664850991141,40,tcbtr
19,0.6379834519420476,26,mlyas
7,0.6559538612897098,49,efcsm
10,0.701592457357365,9,mlyas
6,0.717887788740719,44,mlyas
9,0.7338088959472877,36,tcbtr
3,0.7678670658611503,44,efcsm
1,0.7797461486214806,32,efcsm
4,0.8223095493965592,2,bgmqd
14,0.8235585667750851,7,efcsm
0,0.8633713864104114,21,mlyas
2,0.9415640935512127,24,tcbtr

to_pandas

pdf = df_mod.to_pandas()
pdf

.dataframe tbody tr th {
    vertical-align: top;
}

.dataframe thead th {
    text-align: right;
}

</style>

	index	values	some_ints	name
0	0	0.863371	21	mlyas
1	1	0.779746	32	efcsm
2	2	0.941564	24	tcbtr
3	3	0.767867	44	efcsm
4	4	0.822310	2	bgmqd
5	5	0.068329	31	bgmqd
6	6	0.717888	44	mlyas
7	7	0.655954	49	efcsm
8	8	0.089277	44	tcbtr
9	9	0.733809	36	tcbtr
10	10	0.701592	9	mlyas
11	11	0.043383	11	lmqgd
12	12	0.329743	12	bgmqd
13	13	0.101176	31	mlyas
14	14	0.823559	7	efcsm
15	15	0.582966	40	tcbtr
16	16	0.140165	26	mlyas
17	17	0.434366	38	efcsm
18	18	0.409773	35	mlyas
19	19	0.637983	26	mlyas

to_numpy_dataframe

ndf = df_mod.to_npd()
print(ndf)
print(ndf.shape)

    index    values  some_ints   name
0       0  0.863371         21  mlyas
1       1  0.779746         32  efcsm
2       2  0.941564         24  tcbtr
3       3  0.767867         44  efcsm
4       4  0.822310          2  bgmqd
5       5  0.068329         31  bgmqd
6       6  0.717888         44  mlyas
7       7  0.655954         49  efcsm
8       8  0.089277         44  tcbtr
9       9  0.733809         36  tcbtr
10     10  0.701592          9  mlyas
11     11  0.043383         11  lmqgd
12     12  0.329743         12  bgmqd
13     13  0.101176         31  mlyas
14     14  0.823559          7  efcsm
15     15  0.582966         40  tcbtr
16     16  0.140165         26  mlyas
17     17  0.434366         38  efcsm
18     18  0.409773         35  mlyas
19     19  0.637983         26  mlyas
(20, 4)

to_csv

path_output = os.path.expanduser("~") + "/.tmp/example_mod.csv"
df_mod.to_csv(path_output)

For future development

add_rows(n)
keep_na = False
rename

Internal gawk command example (where command):


    function is_digit_field(field){
        if (field ~ /^[\\+-]?[0-9]+$|^[\\+-]*[0-9]*[\\.]?[0-9]+$|^[\\+-]*[0-9]*[\\.]?[0-9]+[eE]?[\\+-]?[0-9]+$|#N\/A|#N\/A|N\/A|#NA|-1.#IND|-1.#QNAN|-NaN|-nan|1.#IND|1.#QNAN|<NA>|<na>|NA|NULL|NaN|n\/a|nan|null||Nan|-Nan/){
            return 1
        }else{
            return 0
        }
    }

    function needs_quotes(field){
    #postgres_standard: delimiter character, the QUOTE character, the NULL string, a carriage return, or line feed character, t

        regex = "(" FS ")+|(\\n)+|(" input_quote ")+|\r+"
        if (field ~ regex){
            return 1
        }else{
            return 0
        }
    }

    function transform_field(field,column){
        if (is_first_command && !is_last_command && original_level_simplicity_csv != 2){
            gsub(/\n/,delimiter_internal_notation "n" delimiter_internal_notation,field)
            gsub(FS,delimiter_internal_notation "d" delimiter_internal_notation,field)
            gsub(input_quote, delimiter_internal_notation "q" delimiter_internal_notation, field)
            gsub("\r", delimiter_internal_notation "r" delimiter_internal_notation, field)
        }
        if (is_last_command && !is_first_command  && original_level_simplicity_csv != 2){
            gsub(delimiter_internal_notation "n" delimiter_internal_notation,"\n",field)
            gsub(delimiter_internal_notation "d" delimiter_internal_notation,FS,field)
            gsub(delimiter_internal_notation "q" delimiter_internal_notation,input_quote, field)
            gsub(delimiter_internal_notation "r" delimiter_internal_notation,"\r", field)
        }
        if (is_digit_field(field) || (level_simplicity_csv == 2 && (!is_last_command || original_level_simplicity_csv == 2))){
            if (!is_digit_field()){
                field = transform_string(field,column)
                if (input_quote != output_quote){
                    gsub(input_quote,output_quote,field)
                }
            }else{
                return transform_digit(field,column)
            }
            return field
        }else{
            field = transform_string(field,column)
            if (quotes_have_been_removed){
                if (full_string_quoting){
                    return output_quote field output_quote
                }else{
                    if (needs_quotes(field) && minimal_string_quoting || field == delimiter_internal_notation "NULL" delimiter_internal_notation){
                        if (field == delimiter_internal_notation "NULL" delimiter_internal_notation){
                            gsub(delimiter_internal_notation "NULL" delimiter_internal_notation,"NULL",field)
                        }
                        return output_quote field output_quote
                    }else{
                        return field
                    }
                }
            }else{
                return field
            }
        }

    }



    function print_field(field,column){


        field = transform_field(field,column)

        if (FNR == NR && find_unique){
            unique[field] = 1
        }else{
            if (print_fields){
                output_separator = OFS
                if (i == max_col() && !add_new_column){
                    output_separator = ORS
                }
                if (i == min_col()){
                    if (add_index){
                        if (!save){
                            printf("%s" output_separator,print_line_number() + index_based_on)
                        }else{
                            printf("%s" output_separator,print_line_number() + index_based_on) > path_output
                        }

                    }
                }
                if (!save){
                    printf "%s" output_separator,field
                }else{
                    printf "%s" output_separator,field > path_output
                }

            }
        }
    }


    function print_line(line){
        line = transform_line(line)
        if (print_fields){
            if (add_index){
                if (!save){
                    printf("%s" OFS,print_line_number() + index_based_on)
                }else{
                    printf("%s" OFS,print_line_number() + index_based_on) > path_output
                }

            }
            if (input_quote != output_quote){
                gsub(input_quote,output_quote,line)
            }

            if (!save){
                if (sort){
                    sort_command = "sort -t'" OFS "' --parallel " num_cores " -nk" sort_column
                    printf "%s" ORS,line | sort_command
                }else{
                    printf "%s" ORS,line
                }
            }else{
                printf "%s" ORS,line > path_output
            }
        }
    }

    function print_line_number(){
        if (output_header){
            return FNR-records_skipped - 2
        }else{
            return FNR-records_skipped - 1
        }
    }

    function line_number(){
        if (header){
            return FNR-records_skipped - 1
        }else{
            return FNR-records_skipped
        }

    }

    function print_header(){
        if (add_index){
            field = transform_field("index",1)
            if (!save){
                printf("%s" OFS,field)
            }else{
                printf("%s" OFS,field) > path_output
            }

        }
        if (fields_based_code){
            for (i=min_col();i<=max_col();i++) {
                if ((number_files_input == 1 || input_file_rows) || (input_file_cols && v[i])){
                    if (is_first_command && !is_last_command && level_simplicity_csv != 2){
                        gsub(/\n/,delimiter_internal_notation "n" delimiter_internal_notation,$i)
                        gsub(FS,delimiter_internal_notation "d" delimiter_internal_notation,$i)
                        gsub(input_quote, delimiter_internal_notation "q" delimiter_internal_notation, $i)
                        gsub("\r", delimiter_internal_notation "r" delimiter_internal_notation, $i)
                    }
                    if (is_last_command && !is_first_command  && level_simplicity_csv != 2){
                        gsub(delimiter_internal_notation "n" delimiter_internal_notation,"\n",$i)
                        gsub(delimiter_internal_notation "d" delimiter_internal_notation,FS,$i)
                        gsub(delimiter_internal_notation "q" delimiter_internal_notation,input_quote, fldStr)
                        gsub(delimiter_internal_notation "r" delimiter_internal_notation,"\r", $i)
                    }
                    output_separator = OFS
                    if (i == max_col() && !add_new_column){
                        output_separator = ORS
                    }
                    if (!save){
                        printf "%s" output_separator,transform_header($i,i)
                    }else{
                        printf "%s" output_separator,transform_header($i,i) > path_output
                    }
                }

            }
            add_column()
        }else{
            gsub(input_quote,output_quote,$0)
            if (!save){
                printf "%s" ORS,$0
            }else{
                printf "%s" ORS,$0 > path_output
            }
            add_column()

        }

    }

    function min_col(){
        if (1 > col_start){
            return 1
        }else{
            return col_start
        }
    }

    function max_col(){
        if (col_end == INF){
            return NF
        }else{
            if (NF < col_end){
                return NF
            }else{
                return col_end
            }
        }
    }

    function add_column(){
        if (add_new_column){
            if (line_number() == 0){
                printf "%s" ORS,name_new_column
            }else{
                printf "%s" ORS,""
            }
        }

    }

    function transform_header(field,column){
        return field
    }




    #################################
    #################################


    function transform_column(field,column){

    return field
    }


    function transform_digit(field,column){
    field = transform_column(field,column)

    return field
    }


    function transform_string(field,column){
    field = transform_column(field,column)

    return field
    }

    function transform_line(line){

    return line
    }

        function condition(){
        statement = 1
        statement = ($3 ~ /^"?crlsb"?$/)
        return statement
        }

    BEGIN {
        PREC=100
        OFMT="%.10g"
        CONVFMT="%.10g"

        is_first_command = 0
        is_last_command = 0


        delimiter_internal_notation = ":"
        if (FS == delimiter_internal_notation){
            delimiter_internal_notation = "#"
        }

        input_quote = "\""
        output_quote = "\""

        level_simplicity_csv = 2

        FS =","

        OFS=","


        original_level_simplicity_csv = 0

        if (level_simplicity_csv <= 1){
            FPAT="([^" FS "]*)|(" input_quote "([^" input_quote "]|" input_quote input_quote ")+" input_quote ")"
        }


        records_skipped = 0

        minimal_string_quoting = 1
        full_string_quoting = !minimal_string_quoting

        is_unix_input = 1
        is_unix_output = 1

        if (is_unix_input){
        RS = "\n"
        }else{
        RS = "\r\n"
        }

        if (is_unix_output){
        ORS = "\n"
        }else{
        ORS = "\r\n"
        }
        null_input_string = "NULL"
        null_output_string = ""

        header = 1
        output_header = 1

        if (!header){
            output_header = 0
        }

        add_index = 0
        index_based_on = 0

        line_based_code = 0
        fields_based_code = !line_based_code

        col_start = 1
        col_end = INF

        row_start = 1
        row_end = INF

        number_files_input = 1
        input_file_rows = 1
        input_file_cols = !input_file_rows

        find_unique = 0

        print_fields = 1

        save = 0
        path_output = ""

        sort = 0
        sort_column = 1
        num_cores = 4
        sort_in_parallel = 1

        calculate_shape = 0

        check_complexity = 0

        add_new_column = 0
        name_new_column = ""

        if (check_complexity){
            has_maximum_complexity = 0
            print_fields = 0
        }

        quotes_have_been_removed = 0
        number_fields = 0
        continue_next_line = 0
    }



    {
        if (!calculate_shape){

            if (check_complexity || number_files_input == 1){
                if (check_complexity){
                    if (line_number() == 0){
                        number_fields = max_col()
                        has_maximum_complexity = 0
                    }else{
                        if (max_col() < number_fields){
                            has_maximum_complexity = 1
                            exit
                        }
                    }
                }else{
                    if (line_number() == 0 && header){
                        number_fields = NF
                        if (output_header){
                            print_header()
                        }
                    }else{
                        if (fields_based_code){
                            if (line_number() >= row_start){
                                for (i=min_col();i<=max_col();i++) {
                                    if (condition()){
                                        print_field($i,i)
                                    }
                                }
                                i=min_col()
                                if (min_col() == max_col() && $i == ""){
                                    print(":n:")
                                }
                                add_column()
                            }
                        }else{
                            if (line_number() >= row_start){
                            if (condition()){
                                print_line($0)
                            }

                            }
                        }
                        if (row_end != INF && line_number() > row_end){
                        exit
                        }
                    }
                }
            }else{
                if (FNR == NR){
                    v[$0] = 1

                }else{
                    if (FNR!=NR && FNR == 1){
                        records_skipped = 0
                    }
                    if (line_number() == 0 && header){
                        number_fields = max_col()
                        if (output_header){
                            print_header()
                        }
                    }else{
                        if (fields_based_code){
                            if (line_number() >= row_start){
                                for (i=min_col();i<=max_col();i++) {
                                if (condition()){
                                    field = $i
                                    if (input_file_rows && v[line_number()]){
                                        print_field(field,i)
                                    }else{
                                        if (input_file_cols && v[i]){
                                            print_field(field,i)
                                        }
                                    }
                                }
                                }
                                i=min_col()
                                if (min_col() == max_col() && $i == ""){
                                    print(":n:")
                                }
                                add_column()
                            }
                        }else{
                            if (line_number() >= row_start){
                            if (condition()){
                                if (input_file_rows && v[line_number()]){
                                    print_line($0)
                                }

                            }

                            }
                        }
                        if (row_end != INF && line_number() > row_end){
                        exit
                        }
                    }
                }


            }
        }

    }


    END{
        if (find_unique){
            for (key in unique){
                print(key)
            }
        }
        if (calculate_shape){
            print print_line_number()
            print NF
        }
        if (check_complexity){
            print has_maximum_complexity
        }


    }
    ```

Project details

Release history Release notifications | RSS feed

0.2.11

Feb 3, 2023

0.2.10

Jan 26, 2023

0.2.9

Jan 17, 2023

0.2.8

Dec 2, 2022

0.2.7

Nov 25, 2022

0.2.6

Nov 21, 2022

This version

0.2.5

Nov 21, 2022

0.2.4

Nov 20, 2022

0.2.3

Nov 18, 2022

0.2.2

Nov 17, 2022

0.2.1

Nov 17, 2022

0.2.0

Nov 17, 2022

0.1.4

Nov 10, 2022

0.1.3

Nov 8, 2022

0.1.2

Nov 8, 2022

0.1.1

Nov 8, 2022

0.1.0

Nov 7, 2022

0.0.11

Nov 4, 2022

0.0.10

Nov 3, 2022

0.0.9

Nov 2, 2022

0.0.8

Oct 31, 2022

0.0.7

Oct 31, 2022

0.0.6

Oct 31, 2022

0.0.5

Oct 31, 2022

0.0.4

Oct 31, 2022

0.0.3

Oct 31, 2022

0.0.2

Oct 30, 2022

0.0.1

Oct 30, 2022

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