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Python API Interface for DSMZ BacDive

Project description

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BacDivePy

A python interface for the Bacterial Diversity Metadatabase (Söhngen et al. 2014 & 2016) of the DSMZ (German Collection of Microorganisms and Cell Cultures). BacDivePy is modeled after BacDiveR

Installation

pip install git+https://github.com/cameronmartino/BacDivePy.git

Tutorials

References

  • Söhngen, Carola, Boyke Bunk, Adam Podstawka, Dorothea Gleim, and Jörg Overmann. 2014. “BacDive—the Bacterial Diversity Metadatabase.” Nucleic Acids Research 42 (D1): D592–D599. doi:10.1093/nar/gkt1058.

  • Söhngen, Carola, Adam Podstawka, Boyke Bunk, Dorothea Gleim, Anna Vetcininova, Lorenz Christian Reimer, Christian Ebeling, Cezar Pendarovski, and Jörg Overmann. 2016. “BacDive – the Bacterial Diversity Metadatabase in 2016.” Nucleic Acids Research 44 (D1): D581–D585. doi:10.1093/nar/gkv983.

  • BacDiveR

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