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Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool

Project description

Documentation Status Conda Version PyPI version Maintainability

status DOI License

Platform

Build Status

Linux

Build Status TravisCI

Windows

Build status Appveyor

conda

noarch

Host

Downloads

PyPI

Downloads

conda

Conda Downloads

BAMnostic

a pure Python, OS-agnositic Binary Alignment Map (BAM) file parser and random access tool.

Note:

Documentation can be found at here or by going to this address: http://bamnostic.readthedocs.io. Documentation was made available through Read the Docs.


Installation

There are 4 methods of installation available (choose one):

Through the conda package manager (Anaconda Cloud)

# first, add the conda-forge channel to your conda build
conda config --add channels conda-forge

# now bamnostic is available for install
conda install bamnostic

Through the Python Package Index (PyPI)

pip install bamnostic

# or, if you don't have superuser access
pip install --user bamnostic

Through pip+Github

# again, use --user if you don't have superuser access
pip install -e git+https://github.com/betteridiot/bamnostic.git#egg=bamnostic

# or, if you don't have superuser access
pip install --user -e git+https://github.com/betteridiot/bamnostic.git#bamnostic#egg=bamnostic

Traditiona

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

bamnostic-1.1.6.tar.gz (185.0 kB view hashes)

Uploaded Source

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