Read bam files quickly into dataframes in Python

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bamread

Read bam files quickly into dataframes in Python

Development

Development

See How to Publish an Open-Source Python Package to PyPI

Install

pip install -e .  # -e flag means editing affects the installed package

Create sdist and wheel (requires build)

python -m build

Check whether the package archives look fine:

twine check dist/*

Upload to PyPI test server

twine upload -r testpypi dist/*

Chek that the package can be installed from the test server

python -m pip install -i https://test.pypi.org/simple bamread
python -c "import bamread; print(bamread.read_bam('Some.bam'))"

Upload to pypi

twine upload -r testpypi dist/*

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This version

0.0.16

0.0.15

0.0.14

0.0.13

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

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bamread-0.0.16.tar.gz (191.3 kB view details)

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bamread-0.0.16-pp39-pypy39_pp73-win_amd64.whl (249.3 kB view details)

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bamread-0.0.16-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (268.3 kB view details)

Uploaded PyPy manylinux: glibc 2.17+ x86-64

bamread-0.0.16-pp39-pypy39_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl (269.5 kB view details)

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bamread-0.0.16-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (252.4 kB view details)

Uploaded PyPy macOS 10.9+ x86-64

bamread-0.0.16-pp38-pypy38_pp73-win_amd64.whl (249.2 kB view details)

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bamread-0.0.16-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (269.7 kB view details)

Uploaded PyPy manylinux: glibc 2.17+ x86-64

bamread-0.0.16-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl (270.4 kB view details)

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bamread-0.0.16-pp37-pypy37_pp73-win_amd64.whl (249.2 kB view details)

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bamread-0.0.16-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (269.7 kB view details)

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bamread-0.0.16-pp37-pypy37_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl (270.5 kB view details)

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bamread-0.0.16-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (252.1 kB view details)

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bamread-0.0.16-cp311-cp311-win_amd64.whl (256.0 kB view details)

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bamread-0.0.16-cp311-cp311-win32.whl (246.5 kB view details)

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bamread-0.0.16-cp311-cp311-musllinux_1_1_x86_64.whl (675.4 kB view details)

Uploaded CPython 3.11 musllinux: musl 1.1+ x86-64

bamread-0.0.16-cp311-cp311-musllinux_1_1_i686.whl (654.8 kB view details)

Uploaded CPython 3.11 musllinux: musl 1.1+ i686

bamread-0.0.16-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (678.5 kB view details)

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bamread-0.0.16-cp310-cp310-win_amd64.whl (256.5 kB view details)

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bamread-0.0.16-cp310-cp310-musllinux_1_1_x86_64.whl (656.0 kB view details)

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bamread-0.0.16-cp310-cp310-musllinux_1_1_i686.whl (636.8 kB view details)

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bamread-0.0.16-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (650.3 kB view details)

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bamread-0.0.16-cp39-cp39-win_amd64.whl (258.2 kB view details)

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bamread-0.0.16-cp39-cp39-musllinux_1_1_x86_64.whl (662.9 kB view details)

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bamread-0.0.16-cp39-cp39-musllinux_1_1_i686.whl (639.0 kB view details)

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bamread-0.0.16-cp38-cp38-win32.whl (248.4 kB view details)

Uploaded CPython 3.8 Windows x86

bamread-0.0.16-cp38-cp38-musllinux_1_1_x86_64.whl (680.1 kB view details)

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bamread-0.0.16-cp38-cp38-musllinux_1_1_i686.whl (658.1 kB view details)

Uploaded CPython 3.8 musllinux: musl 1.1+ i686

bamread-0.0.16-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (663.0 kB view details)

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bamread-0.0.16-cp37-cp37m-win_amd64.whl (256.8 kB view details)

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