Read bam files quickly into dataframes in Python
Project description
bamread
Read bam files quickly into dataframes in Python
Development
Development
See How to Publish an Open-Source Python Package to PyPI
Install
pip install -e . # -e flag means editing affects the installed package
Create sdist and wheel (requires build)
python -m build
Check whether the package archives look fine:
twine check dist/*
Upload to PyPI test server
twine upload -r testpypi dist/*
Chek that the package can be installed from the test server
python -m pip install -i https://test.pypi.org/simple bamread
python -c "import bamread; print(bamread.read_bam('Some.bam'))"
Upload to pypi
twine upload -r testpypi dist/*
Project details
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Source Distribution
bamread-0.0.16.tar.gz
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Built Distributions
bamread-0.0.16-cp311-cp311-win32.whl
(246.5 kB
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bamread-0.0.16-cp310-cp310-win32.whl
(247.2 kB
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bamread-0.0.16-cp39-cp39-win32.whl
(248.6 kB
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bamread-0.0.16-cp38-cp38-win32.whl
(248.4 kB
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bamread-0.0.16-cp37-cp37m-win32.whl
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Hashes for bamread-0.0.16-pp39-pypy39_pp73-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | e8a5e62333a8f112a99b87d42b8e041eec3d0d3a9414bf35f7f9348972e4f3ff |
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MD5 | 34b8dccb649e2325ec7394383fb8a4c3 |
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BLAKE2b-256 | c4a618c13b5e1566a5a90999324c8db483097d5f9b07fe8a6c27e855b4d06a29 |
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Hashes for bamread-0.0.16-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | d12735ee0a7ce4365243a6e7b98d7a9fe025fb4c3319d8a85b4284fad1a7fa6e |
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MD5 | 41a4dd69c88b11f9c522debc04e4b0d8 |
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BLAKE2b-256 | cda49552cc45f347b033e8f94581b1bb80dd071331ec9279db58e8a8abdc11ac |
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Hashes for bamread-0.0.16-pp39-pypy39_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | b329ff078aeb6db28dd913dc5fd4c4c014f47407fc30da0d76b4da0bcb094960 |
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MD5 | 674ec31fc4fa00c16758432693d01fdc |
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BLAKE2b-256 | 5ce54c34d15df258eb9abccd97c63a02f0b826ea4e3c976db25b32d7e7003a02 |
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Hashes for bamread-0.0.16-pp39-pypy39_pp73-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | d0a9b48b8d3218e48b50d28ccca5705b23f3db6103e351682ea71f9f2a932e09 |
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MD5 | a5efe2c5862b42e6e13e18a0983beadd |
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BLAKE2b-256 | b10e1af0297ea946df1dadc7debd274d59bb309930010e396758bd4125e58a34 |
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Hashes for bamread-0.0.16-pp38-pypy38_pp73-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 74a4a36dfe0c1fdcf4d20b5c6b996ea9c97a9d4ab57c5441ff69c092de79907e |
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MD5 | df6d1e9c48bd8c853617b82ec7f8cb7e |
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BLAKE2b-256 | 6526a09c60d6a3ce8e691a383d8a2ee648aac385fc09b4d6be9e47192d8da1b2 |
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Hashes for bamread-0.0.16-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a3632cc35224dfaa86f8e2c39e84907699ef0b8c41001273562a8508024c8153 |
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MD5 | 3ad3a1b4848418a51843b18e169c12e4 |
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BLAKE2b-256 | aa8478df273bf7224751e2dca47b7e8418be5861cfca786d370e9eb3dfc8b4d0 |
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Hashes for bamread-0.0.16-pp38-pypy38_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | 14285e9629fa602da1965307efd28c75caab599a479c0142767d8e0fa2990c0f |
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MD5 | 7bf6ebe0e50519795ba7b08b8a08aa86 |
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BLAKE2b-256 | fe719130942f559c8798a2bc46a1bc6a797fbd60c836d85de962a970b1ac24f3 |
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Hashes for bamread-0.0.16-pp38-pypy38_pp73-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 3e6ed667373849c851e754360553091643a0ec398a0c85a83115c00aa8ef30fb |
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MD5 | 4913f61761d0d813cee8a82001cd07d9 |
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BLAKE2b-256 | 953f188748aa4a93f612c0d99ba2cefc81647f88270f3b30b75a7ae640b3ee49 |
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Hashes for bamread-0.0.16-pp37-pypy37_pp73-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | d661853db9f41e720e1694e6ff78335999c1d0c7e4cd788c0ed501d0fa4c9cd0 |
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MD5 | bc56e70394a559010624bbfa271bf38e |
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BLAKE2b-256 | 351ca7b6a3d9afaecd478286ccd06f127c7d6da3b67bdf67cba0d288c2b36cb0 |
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Hashes for bamread-0.0.16-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 07e95a967a2f6dfe08dfad4e3c5865c6b3e5abc015c4d896e5920e1fd009f89e |
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MD5 | 324b33b210ca44ab94e778e132c2abfd |
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BLAKE2b-256 | 545dd401c9756edc178306b49b76858bd932ef4f7d6c28e564d9dcdbf146af9f |
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Hashes for bamread-0.0.16-pp37-pypy37_pp73-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | 3b64b459d6602705abf422bfa851cf9fcb1ed034778d09bf64e7df4570b92a40 |
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MD5 | b549a1aa0a0a7f83676dba9782ee7516 |
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BLAKE2b-256 | b7dc7a08445c09cc598662e6f71536bb47f099e76b7ed7edea06fe3016b97bff |
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Hashes for bamread-0.0.16-pp37-pypy37_pp73-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 326c07c81f76774a4ebc535e16f90d3fef7f5efd9055bbccdd430fd6d39b25ea |
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MD5 | 35bb989fe64d7507ac65a8f3a4cb97a7 |
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BLAKE2b-256 | e966bf9538b113a91e701c8b8100cfbf03344f52c717a062dbd32802228fc79e |
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Hashes for bamread-0.0.16-cp311-cp311-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | c3610a8e6f28c7aa21c03efe2ca38a37104aafab3121ad554d6d0b26bfcdca13 |
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MD5 | 7bd8164480e4ccceaa85dc7c255b3fac |
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BLAKE2b-256 | f2f2e65a05d7d3e28e6929a522f5a7efbc8ded6b206aab63f1b4d15ded51892c |
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Hashes for bamread-0.0.16-cp311-cp311-win32.whl
Algorithm | Hash digest | |
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SHA256 | 3aa29e7f1a93b5aec1ef6008a3d7de3ff1dc980adeca385eb5e4cd153ae49590 |
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MD5 | 0573b004817ff4d6b9f9a4a3eee5de42 |
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BLAKE2b-256 | 0900f4be51d31115f390b31af22fad90c1a6e4526f98a607c1562baa3ad18670 |
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Hashes for bamread-0.0.16-cp311-cp311-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 00b6e2e1c06405688b08024420e861d13c5746084892d2b52773b15ed3620391 |
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MD5 | 7080d440d1112332af25480992b4e132 |
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BLAKE2b-256 | e5a782f30068295fdb87921dbc021e9d3d2f780beaa9cbba1b573a6af6cd42c3 |
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Hashes for bamread-0.0.16-cp311-cp311-musllinux_1_1_i686.whl
Algorithm | Hash digest | |
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SHA256 | c0a17f83687b4d49d6bbaeac46194e3ffa8690f4ee7f2c91d1a613511dde3dba |
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MD5 | 9059882e7ada518a20d01bd59728a6b6 |
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BLAKE2b-256 | 00e8dee21a354d0713f7e74cd87744e5d26bdd046caa8f35f1b8c89157121dc3 |
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Hashes for bamread-0.0.16-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | fd392195d07454630ab22a3cb473b17939ab1d0a87d21b7d49dfd10da9790c6e |
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MD5 | 1909903e647254705f1a7e8c1afc027e |
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BLAKE2b-256 | 4d1745d752201d797e6ec722e8980c9cb7c3d5157ebf105bf905c9304ef0e161 |
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Hashes for bamread-0.0.16-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | c05752861655e194ba3fcbd9708ce2f1bc6ef6aae94a3cfa5604ca2fed8420f2 |
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MD5 | 586d3215e64f1bf309b4c323b5b4424f |
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BLAKE2b-256 | b3284c13e95bdd96b246ec004a17593cc59aca8213a3a796b1c527ff57af628a |
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Hashes for bamread-0.0.16-cp311-cp311-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 02472a56ad14277ba266c2d9d9b4e8375e29b1770e449158964229f9f8f9c747 |
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MD5 | c541f7beb8eb10e6039cc5b8a3e9935b |
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BLAKE2b-256 | 27362487fca45d8118a45cc9fd478a25cdd56138449649d20752a62e3cbe3f1c |
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Hashes for bamread-0.0.16-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 23a1ea7dc90e1324e5f8271285ccc7a8cc0d218ae5e51bd6574b6bfe9263c7f9 |
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MD5 | 073ed66f7d45d944d47e6fcdc7c73192 |
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BLAKE2b-256 | 317930951390f92153db349a06cf87761f02cf72792153f6642244848c337ae2 |
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Hashes for bamread-0.0.16-cp310-cp310-win32.whl
Algorithm | Hash digest | |
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SHA256 | 5b20cb329e522af970305ff3180f8afcfc37ecee756379fca3c1dfeaed2697ec |
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MD5 | 5b018b759a1909762c4be492b67c5fe0 |
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BLAKE2b-256 | aaf8bac841c5bf83cb2825e04183732b1614be5ee2aed544b7fb77d38697bce5 |
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Hashes for bamread-0.0.16-cp310-cp310-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | a767716e6685c7b09361d9d032c73e2cda19d93687f3befd006170b17413af79 |
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MD5 | f78286e3fef6a7a39c8d7246587305c3 |
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BLAKE2b-256 | ab75c7519dd073331c0d16938dde6906da64691a8eae7dc7930e95ff47a4b043 |
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Hashes for bamread-0.0.16-cp310-cp310-musllinux_1_1_i686.whl
Algorithm | Hash digest | |
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SHA256 | 3cc3128b5eba2bf53bb1e98bf165f0082869638d4c5bd7bffcd97fd9c3c43731 |
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MD5 | c83a4d57173ab3cab854c1e92bd11389 |
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BLAKE2b-256 | 080161b838e34f3873760dd9e2621fea70b2673b463b5d47d7d923dd23459553 |
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Hashes for bamread-0.0.16-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 4ed59c49bcc1594b75fd2ba96273db38e8ed10c566dd81d13c59fecdfca865bc |
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MD5 | 3742e400638ff64a4e1d652bdfcdb03c |
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BLAKE2b-256 | 0ac5168a19608e4950f0734f20f465a16e33958e9a860025cb7d20d5414accb5 |
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Hashes for bamread-0.0.16-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | d9aefbee411aedf301d6b92483e07a4a857e980d02fd75a171a6f4ee589b3dd2 |
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MD5 | 86597b86c0b040d8d72f58d402cc1f2b |
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BLAKE2b-256 | 790ecb672a6c07e1ec3bf780a91890168fbe749c63066c457db3a5d05f3ca90d |
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Hashes for bamread-0.0.16-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | e4468e896ace213de20fbc34246299c4a4cceee7e02163c6a6357b611e3431fa |
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MD5 | 14dd4e8ebcf503a9a27acc506a0f058e |
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BLAKE2b-256 | a5462dfa8f050edca3904d8427e602810c1a8c885cdc96ace4e789c9794cb283 |
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Hashes for bamread-0.0.16-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 29299f37650051df74941e9e93118db5a642f8940bb9e63443cca474a8077f3e |
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MD5 | d6d862240fba0277e549fc154e4e74f9 |
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BLAKE2b-256 | 276b389091bc9b1de0eb06da76d36c5cfcd33e9f7fbc376dbb6cae89898e2bde |
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Hashes for bamread-0.0.16-cp39-cp39-win32.whl
Algorithm | Hash digest | |
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SHA256 | 1f023b728c0d6543f1fff465025e3368cdad09b329a67bbfa2650b09d2a0aad2 |
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MD5 | 96abbd4432c8f609e3cb157cfa155e98 |
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BLAKE2b-256 | 024033a04e9bff694508bc000b6e70bf667fe2dbea36ba78a2b0fe1cf2419333 |
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Hashes for bamread-0.0.16-cp39-cp39-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 95853b8d20b4080d6e2a255b44f60a83c7ef8ec9c285344d55ffc0050ab712fa |
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MD5 | 95a402930c22c302c38260ce43fd5d72 |
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BLAKE2b-256 | 7031663bf785cbc1490a66f105b3641f7ab30908795d054cb1defadf4a49f2a7 |
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Hashes for bamread-0.0.16-cp39-cp39-musllinux_1_1_i686.whl
Algorithm | Hash digest | |
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SHA256 | 86f1a1aae76a35c85aa6205fbe7325406f04e44b63a7dce4e3a95c0fb9afe8e4 |
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MD5 | 9b28f432e74ce8870ba25f01eaf4247c |
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BLAKE2b-256 | 026f46182447dde25bb74335c6a1920cc9b5365b50be4e65481425831121f7e2 |
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Hashes for bamread-0.0.16-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | c490b6111c4e3e22d725d9e2b06c58deaafa9ddbcf2798a3eb7aa455bbf02ab3 |
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MD5 | dfe640d9d84f7ba5c3b858679fb4aed8 |
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BLAKE2b-256 | c0518c4c9159ecd9498646750ca561bfb92fc1ddbb2bed9db3973d5fa1c88bdf |
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Hashes for bamread-0.0.16-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | 75e41be3e7e8f3724324911a20b4cae37c35e131296b8f965e1bb55ce2ea4759 |
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MD5 | 332a5c166a8abe51261b47d17417dacd |
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BLAKE2b-256 | 21c1acd0c17a76c48833bd085eff3cddd031904629e31edf3c317f726d1fb626 |
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Hashes for bamread-0.0.16-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 03149c09793b762a52b2a6a7bc53927ee364f3ab74a83235ea1842d9c93bbf7e |
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MD5 | a60e001cd36612f5cb9e1e67765f6522 |
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BLAKE2b-256 | b1e232ffa6bb0ce39d2f6321984da01727aba790a9d68e0f74c32ca403cbdd2d |
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Hashes for bamread-0.0.16-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 53f8621aa26bd6bb2924f8e158cb2b880de34457a3b010d83ced9cb29b32de9f |
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MD5 | c1c936623112c697f6ae492fdd169089 |
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BLAKE2b-256 | 92fc341e38c3ad8ca5f84bb73e2b2bd49290b72bd658aa87fdb721773d61a004 |
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Hashes for bamread-0.0.16-cp38-cp38-win32.whl
Algorithm | Hash digest | |
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SHA256 | bd82cf0833a1dc7c88275251c34525158c72a4428208cf28ad0665b8d4544914 |
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MD5 | 59628a2862f2c5c463c224471fcaf467 |
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BLAKE2b-256 | ce8df26833a81666485d7d1d41d3160b866687718c154cbc5fd04b561d0d0409 |
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Hashes for bamread-0.0.16-cp38-cp38-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | f7bfcc56dc3f194de15740c4be1d74ef62a34c2c65d80147bdd2e9da756da22b |
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MD5 | 7e51423e13ea3b732da34e0e9d37f5d8 |
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BLAKE2b-256 | 7a3573175d7ee7c26834cf6a897e68b5947d0b0f214d842dfd9b01e3703ae05c |
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Hashes for bamread-0.0.16-cp38-cp38-musllinux_1_1_i686.whl
Algorithm | Hash digest | |
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SHA256 | d8e05035173c4c984cdda2be901c2460b133cddcaf8ba155aeafa551cebe7288 |
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MD5 | b784e08e8c4dab09658f2fa3cadc43ea |
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BLAKE2b-256 | 25708d91b45340833c4fdf79f32c903797d3dceaa6b5ea55b628fe67d0803a19 |
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Hashes for bamread-0.0.16-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 31708f4d9970a862b83b84b109eeb2207ce5ba8192202363e40177f9fc0115fe |
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MD5 | b940a63e90fceb3f4d2b661921eb88c3 |
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BLAKE2b-256 | a7bdb578cddd003a44b4731d33ec2e51c0e0de35cf53ff3233bdf757dc9c94a2 |
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Hashes for bamread-0.0.16-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
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SHA256 | 2c044c2e72666f7031e691e47e401c9189ad9406986e8ff48afd1ae4c01fe591 |
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MD5 | acc230ca1a284e183893628cf43c00ba |
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BLAKE2b-256 | 2dc6014232de1198c48643520075dd71fc5d5d988ba799bb5246af85ab969779 |
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Hashes for bamread-0.0.16-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | 233ed71e35f5abcac6561e10ba7c0b6343f4cd5001261708b7c2671b0b1735a8 |
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MD5 | d2009ef481cff0dcbffc21aa606c3005 |
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BLAKE2b-256 | 22fcc60933a6e3b42a7826dd7b9fe745bd7f247a049396e9803c231b80612897 |
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Hashes for bamread-0.0.16-cp37-cp37m-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | 7964e7b760448eba4bf67d8e9a8be74e50f2dae5ffc295e2d6929040a52d4ff0 |
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MD5 | d2021e011803f9201e5d653a3b6e1300 |
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BLAKE2b-256 | ebd11065a52297dcff0be41aec3baf28d2ba2fee141a6e5873e94909c95a3543 |
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Hashes for bamread-0.0.16-cp37-cp37m-win32.whl
Algorithm | Hash digest | |
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SHA256 | e43586a051245a8a33f4d1ee7b0c4245e1a4f3d6b0a5354d28851ff090daa531 |
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MD5 | 46299dd58fe2e9d97b473a98280a4850 |
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BLAKE2b-256 | 0d3ead0a63e80057e9e9ef023bc7ba7953d2f76475559138b5b373ecc912ea4f |
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Hashes for bamread-0.0.16-cp37-cp37m-musllinux_1_1_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | fbb9fd8b5d92982403ac86d2ea206cf70c77b399551dc365e3f8d85f50998718 |
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MD5 | 1880fadf532c6dbb2fbe353fa73f6151 |
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BLAKE2b-256 | c0accbc4dd209801ec8d3850eb72e42733c4b86534b257be4d2d9cb3cf1bd6ed |
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Hashes for bamread-0.0.16-cp37-cp37m-musllinux_1_1_i686.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9e2b77c9d4de40cb90d7a2e391fd128d93216c0ec0dd9219d378a1481a35ed24 |
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MD5 | e7cf5fdffe79b778f7bb6113b57d111d |
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BLAKE2b-256 | 7a62a618a84e5b4e3ba091a0b4cf9508fb7d48b749a57cc2703afc9e41a24d8c |
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Hashes for bamread-0.0.16-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 79967bd80e3608e3bc1ba6dd6d7d5db1d57542289080273116506175b1e358c2 |
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MD5 | 74fa708fa1152f4d322efac6e8dac109 |
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BLAKE2b-256 | d0a474bda10e97cd54a6a32b2203d7bc643989a225bd4b1da0d6becf11df0941 |
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Hashes for bamread-0.0.16-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 3d897bd26f3d545562c98ba52139ca4e6a7bb5cd780f6c9d4fee908a208a9bca |
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MD5 | d6e21793ddf62967db99ee8405a30ee4 |
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BLAKE2b-256 | 67a46b964cab201a4b7456cb3b42da71b8a19e684211c602b652d5f531c3cac6 |
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Hashes for bamread-0.0.16-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b6ebe72c1c8f80089761b0637296f42b1102a77d83ac92a6a73d510d4c696a28 |
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MD5 | 17ab4c21756b718cc9c4821098af8958 |
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BLAKE2b-256 | de4a9e27f9d894ba04fade5ef1b4c14ac562dc360d74bcab570e6d50ea5e97e9 |