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A converter from .bam to .png for specific genomic region.

Project description


BamSnap: a lightweight command-based visualization tool for sequencing reads in BAM files

For more details, see BamSnap Documentation.



Install with pip

pip install bamsnap

Install with github

git clone
cd bamsnap
python install


Simple usage

$ bamsnap -bam test.bam -pos 1:7364529 -out test.png

For more details, see BamSnap Documentation.

Usage with docker

$ docker pull danielmsk/bamsnap
$ docker run --rm -it -v /local_directory_path:/directory_path_in_image danielmsk/bamsnap bamsnap \
    -bam /directory_path_in_image/test.bam \
    -pos 1:7364529 \
    -out /directory_path_in_image/test.png

Example Use Case

Project details

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bamsnap-0.2.19.tar.gz (20.9 MB view hashes)

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bamsnap-0.2.19-py3-none-any.whl (20.9 MB view hashes)

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