A converter from .bam to .png for specific genomic region.
Project description
BAMsnap
BAMSNAP is high-performed command-based visualization tool for the aligned BAM file.
For more details, see BamSnap Documentation.
Installation
Prerequisites
- python 3.4+
- [Pillow (Python Imaging Library)][pil] (5.0.0+)
- [pysam][ps] (1.8.1+)
- pyfaidx
- pytabix
Install with pip
pip install bamsnap
Install with github
git clone https://github.com/parklab/bamsnap
cd bamsnap
python setup.py install
Usage
Simple usage
$ bamsnap -bam test.bam -pos 1:7364529 -out test.png
For more details, see BamSnap Documentation.
Project details
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