A converter from .bam to .png for specific genomic region.
Project description
BAMsnap
BAMSNAP is high-performed command-based visualization tool for the aligned BAM file.
For more details, see BamSnap Documentation.
Installation
Prerequisites
- python 3.4+
- Pillow (Python Imaging Library)
- pysam
- pyfaidx
- pytabix
Install with pip
pip install bamsnap
Install with github
git clone https://github.com/parklab/bamsnap
cd bamsnap
python setup.py install
Usage
Simple usage
$ bamsnap -bam test.bam -pos 1:7364529 -out test.png
For more details, see BamSnap Documentation.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bamsnap-0.2.9.tar.gz
(20.7 MB
view hashes)
Built Distribution
bamsnap-0.2.9-py3-none-any.whl
(20.7 MB
view hashes)