Skip to main content

Enzyme selection for DNA verification and identification

Project description

BandWitch
===========

Bandwitch is a Python library for the planning and analysis of restriction
experiments in DNA assembly operations. Bandwitch implements method to select the best enzyme(s) to validate or identify DNA assemblies. It also provides report generation methods to automatically validate/identify assemblies from experimental data.

You can try BandWitch's enzyme suggestion feature in `this web demo <http://cuba.genomefoundry.org/digestion-selector>`_, and the sequence validation (from AATI fragment analyzer files) in `this other demo <http://cuba.genomefoundry.org/analyze-digests>`_

Infos
------

**PIP installation:**

.. code:: bash

pip install bandwitch

**Web documentation:**

`<https://edinburgh-genome-foundry.github.io/BandWitch/>`_

**Github Page**

`<https://github.com/Edinburgh-Genome-Foundry/BandWitch>`_

**Live demo**

Enzyme suggestion: `<http://cuba.genomefoundry.org/digestion-selector>`_

Fragment analysis validation: `<http://cuba.genomefoundry.org/analyze-digests>`_

**License:** MIT, Copyright Edinburgh Genome Foundry

Screenshots
-----------

Enzymes selected by bandwitch to obtain **clear, optimal** patterns for all tested DNA constructs:

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/BandWitch/master/examples/ideal_digestions.png
:alt: [logo]
:align: center

Enzymes selected by bandwitch to obtain **significant differences** between the patterns of the tested constructs, so that a construct can be identified by its pattern.

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/BandWitch/master/examples/separating_digestions.png
:alt: [logo]
:align: center

More biology software
-----------------------

.. image:: https://raw.githubusercontent.com/Edinburgh-Genome-Foundry/Edinburgh-Genome-Foundry.github.io/master/static/imgs/logos/egf-codon-horizontal.png
:target: https://edinburgh-genome-foundry.github.io/

BandWitch is part of the `EGF Codons <https://edinburgh-genome-foundry.github.io/>`_ synthetic biology software suite for DNA design, manufacturing and validation.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
bandwitch-0.1.3.tar.gz (36.5 kB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page