BandWitch
BandWitch is a Python library for the planning and analysis of restriction experiments in DNA assembly operations. BandWitch implements method to select the best enzyme(s) to validate or identify DNA assemblies. It also provides report generation methods to automatically validate/identify assemblies from experimental data.
You can try BandWitch’s enzyme suggestion feature in this web demo, and the sequence validation (from AATI fragment analyzer files) in this other demo
Infos
PIP installation:
pip install bandwitchWeb documentation: https://edinburgh-genome-foundry.github.io/BandWitch/
Github page: https://github.com/Edinburgh-Genome-Foundry/BandWitch
Live demo:
Enzyme suggestion: http://cuba.genomefoundry.org/digestion-selector
Fragment analysis validation: http://cuba.genomefoundry.org/analyze-digests
License: MIT
Copyright 2017 Edinburgh Genome Foundry, University of Edinburgh
Screenshots
Enzymes selected by bandwitch to obtain clear, optimal patterns for all tested DNA constructs:
![[logo]](https://pypi-camo.freetls.fastly.net/2e66cfe07291714687a998ca9457e196892ccbb8/68747470733a2f2f7261772e67697468756275736572636f6e74656e742e636f6d2f4564696e62757267682d47656e6f6d652d466f756e6472792f42616e6457697463682f6d61737465722f6578616d706c65732f696465616c5f646967657374696f6e732e706e67)
Enzymes selected by bandwitch to obtain significant differences between the patterns of the tested constructs, so that a construct can be identified by its pattern:
![[logo]](https://pypi-camo.freetls.fastly.net/1fefed60f551ccdbb690ed220c8f28044e824ae0/68747470733a2f2f7261772e67697468756275736572636f6e74656e742e636f6d2f4564696e62757267682d47656e6f6d652d466f756e6472792f42616e6457697463682f6d61737465722f6578616d706c65732f73657061726174696e675f646967657374696f6e732e706e67)
More biology software
BandWitch is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.
1 maintainer
Metadata
1 maintainer
Release files for bandwitch 0.3.7
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| bandwitch-0.3.7.tar.gz | 39.9 kB | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bandwitch-0.3.7-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 85.4 kB
Release files / bandwitch-0.3.7.tar.gz
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