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image dataset eda tool to check basic information of images.

Project description

basic-image-eda

A simple eda tool to check basic information of images under a directory(images are found recursively). This tool was made to quickly check info and prevent mistakes on reading, resizing, and normalizing images as inputs for neural networks. It can be used when first joining an image competition or training CNNs with images!

Notes:
- All images are converted to 3-channel(rgb) images. When images that have various channels are mixed, results can be misleading.
- uint8 and uint16 data types are supported. If different data types are mixed, error occurs.

Installation

pip install basic-image-eda

prerequisites:

  • opencv-python
  • skimage.io
  • numpy
  • matplotlib
  • tqdm

Usage(CLI/Code)

CLI

simple one line command!

basic-image-eda <data_dir>

or

basic-image-eda <data_dir> --extensions png tiff --threads 12 --dimension_plot --channel_hist --nonzero --hw_division_factor 2.0

Options:
  -e --extensions          target image extensions.(default=['png', 'jpg', 'jpeg'])
  -t --threads             number of multiprocessing threads. if zero, automatically counted.(default=0)
  -d --dimension_plot      show dimension(height/width) scatter plot.(default=False)
  -c --channel_hist        show channelwise pixel value histogram. takes longer time.(default=False)
  -n --nonzero             calculate values only from non-zero pixels of the images.(default=False)
  -f --hw_division_factor  divide height,width of the images by this factor to make pixel value calculation faster.
                           Height, width information are not changed and will be printed correctly.(default=1.0)
  -V --version             show version.

Code

from basic_image_eda import BasicImageEDA

if __name__ == "__main__":  # for multiprocessing
    data_dir = "./data"

    # below are default values. 
    extensions = ['png', 'jpg', 'jpeg']
    threads = 0
    dimension_plot = False
    channel_hist = False
    nonzero = False
    hw_division_factor = 1.0

    BasicImageEDA.explore(data_dir, extensions, threads, dimension_plot, channel_hist, nonzero, hw_division_factor)

Results

Results on celeba dataset (test set)

found 19962 images.
Using 12 threads.

*--------------------------------------------------------------------------------------*
number of images          |  19962

dtype                     |  uint8
channels                  |  [3]
extensions                |  ['jpg']

min height                |  85
mean height               |  591.8215108706543
max height                |  5616

min width                 |  85
mean width                |  490.2976655645727
max width                 |  5616

mean height/width ratio   |  1.207065732587525
recommended input size    |  [592 488] (h x w, multiples of 8)
recommended input size    |  [592 496] (h x w, multiples of 16)
recommended input size    |  [576 480] (h x w, multiples of 32)

channel mean(0~1)         |  [0.49546506 0.42573904 0.39331011]
channel std(0~1)          |  [0.32161251 0.30237885 0.30192492]
*--------------------------------------------------------------------------------------*

Results on NIH Chest X-ray dataset (images_001.tar.gz)

found 4999 images.
Using 12 threads.

*--------------------------------------------------------------------------------------*
number of images          |  4999

dtype                     |  uint8
channels                  |  [1, 4]
extensions                |  ['png']

min height                |  1024
mean height               |  1024.0
max height                |  1024

min width                 |  1024
mean width                |  1024.0
max width                 |  1024

mean height/width ratio   |  1.0
recommended input size    |  [1024 1024] (h x w, multiples of 8)
recommended input size    |  [1024 1024] (h x w, multiples of 16)
recommended input size    |  [1024 1024] (h x w, multiples of 32)

channel mean(0~1)         |  [0.51725466 0.51725466 0.51725466]
channel std(0~1)          |  [0.25274113 0.25274113 0.25274113]
*--------------------------------------------------------------------------------------*

License

MIT License

Project details


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