Skip to main content

To tar/compress files/directories in batch mode.

Project description

batch-tar

1 Introduction

batch-tar is a tool to extract some fastq reads from the beginning of the files.

2 Installation

pip install batch-tar

There will be a command batch_tar created under the same directory as your pip command.

3 Usage

$ batch_tar

usage: batch_tar [-h] [-l <file>] [-L [<str> [<str> ...]]]
                 [-workdir <directory>] [-tarfile <str>] [-regex <str>]
                 [-compress {z,j}] [-rm] [-p] [--version]

To tar/compress files/directories in batch mode. By Guanliang Meng, see
https://github.com/linzhi2013/batch_tar. version: 0.1

optional arguments:
  -h, --help            show this help message and exit
  -l <file>             path list to be dealed with
  -L [<str> [<str> ...]]
                        basenames of files/subdirecotries in `-workdir`. If
                        `-workdir` was not specified, `-workdir ./` is
                        assumed.
  -workdir <directory>  working directory. must specify `-regex` together
  -tarfile <str>        group all the files/subdirecotries into one file.tar
                        (.bz2 or .gz). only works with `-L` and `-workdir`
  -regex <str>          deal with only the files/subdirecotries in `-l` or
                        `-workdir` whose basenames match the regular
                        expression
  -compress {z,j}       For the subdirecotries, when executing `tar -cf`, also
                        add parameter `z` or `j` for `tar` command. The files
                        will always be gzipped if this option was not set.
  -rm                   delete the files/subdirecotries when tar finishs.
  -p                    only print out the commands, not run. then you can use
                        qsub-sge.pl to submit multiple jobs. Useful to handle
                        a lot of files because I run in single thread mode
                        only! [False]
  --version             show program's version number and exit

Author

Guanliang MENG

Citation

Currently I have no plan for publishing this script.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for batch-tar, version 0.1.1
Filename, size File type Python version Upload date Hashes
Filename, size batch_tar-0.1.1.tar.gz (17.3 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page