bayesint
This repository includes the Python code for calculating Bayesian credible interval of ratios of independent beta distributions. It has been used in Methods for calculating credible intervals for ratios of beta distributions with application to relative risks of premature death during the second plague pandemic
Getting Started
Prerequisites
Installation
Clone the repository then run
python setup.py install
Usage
To get the relative risk of a contingency table given by
| + | _ | Total | |
|---|---|---|---|
| + | P = 56 | M- P | M = 366 |
| - | C = 126 | N - C | N = 354 |
| Total | C + P | N - C + M - P | N + M |
run
from bayesint import rel_risk
rel_risk(56, 126, 366, 354)
# 236/549
and to obtain the equal-tailed quantile interval for the data given in the contingency table run
from bayesint import eqt_int_frac
eqt_int_frac(56, 126, 366, 354, (0, 0, 0, 0), "risk", 0.05, "estim")
# (236/549, 0.184135819539239, 0.667343920284484)
Authors
Maria Bekker-Nielsen Dunbar and Tom Finnie
Contributing
This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the Contributor Covenant code of conduct.
- Fork it
- Create your feature branch (
git checkout -b my-new-feature) - Commit your changes (
git commit -am 'Add some feature') - Push to the branch (
git push origin my-new-feature) - Create a new Pull Request
License
Public Health England 2017
This project is licensed under the Open Government License, see LICENSE for details
Release files for bayesint 1.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| bayesint-1.0.3.tar.gz | 12.2 kB | Without provenance | Details for bayesint-1.0.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| bayesint-1.0.3-py3-none-any.whl | Python 3 | none | any | Details for bayesint-1.0.3-py3-none-any.whl |
Total release size: 24.3 kB
Release files / bayesint-1.0.3.tar.gz
| Download URL | bayesint-1.0.3.tar.gz |
|---|---|
| Size | 12.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
370748d8a1a410fcfd0f226b1e288a58bcec75c93095995a21d09c9b48dbeda6
|
|
BLAKE2b-256 checksum How to use checksums |
f4ab65f740f4933ac00b594158d29c04980c8976c62f715dfa4ccd5f75a79de8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.8
|
Release files / bayesint-1.0.3-py3-none-any.whl
| Download URL | bayesint-1.0.3-py3-none-any.whl |
|---|---|
| Size | 12.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
43dc825b3830602fda21fb6b5b3e2be2de7a47d3c99d5160d35dcfcf3b870dbd
|
|
BLAKE2b-256 checksum How to use checksums |
2fff2b37494a38a10ed65713162fc8cfdbb4df10de0f0c6bed74002017e3cc32
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.8
|
Security for bayesint 1.0.3
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
