bbcu.ngs-snakemake

Snakemake pipeline for Mars-seq and RNA-seq.

Project description

Python version

This project is currently using Python 2.7

Installation

It is recommended to use virtualenv to create a clean python environment.

To install ngs-snakemake, use pip:

pip install bbcu.ngs-snakemake

Testing

To run unit tests, use:

nosetests

Or:

tox

This suite includes both unit and more time-consuming integration tests

Execution

The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here: https://bbcunit.atlassian.net/wiki/pages/viewpage.action?pageId=49053706

Project details

Release history Release notifications | RSS feed

This version

1.0.68

Jun 12, 2019

1.0.67

May 7, 2019

1.0.66

May 7, 2019

1.0.65

May 7, 2019

1.0.64

Apr 15, 2019

1.0.63

Apr 14, 2019

1.0.62

Mar 27, 2019

1.0.61

Mar 27, 2019

1.0.60

Mar 24, 2019

1.0.59

Mar 19, 2019

1.0.58

Mar 19, 2019

1.0.57

Mar 18, 2019

1.0.56

Mar 17, 2019

1.0.55

Mar 14, 2019

1.0.54

Mar 13, 2019

1.0.53

Mar 13, 2019

1.0.52

Mar 13, 2019

1.0.51

Mar 7, 2019

1.0.50

Mar 5, 2019

1.0.49

Feb 26, 2019

1.0.48

Feb 26, 2019

1.0.47

Feb 25, 2019

1.0.46

Feb 25, 2019

1.0.45

Feb 20, 2019

1.0.44

Feb 20, 2019

1.0.43

Feb 19, 2019

1.0.42

Feb 19, 2019

1.0.41

Feb 12, 2019

1.0.40

Feb 11, 2019

1.0.39

Feb 11, 2019

1.0.38

Feb 11, 2019

1.0.37

Feb 10, 2019

1.0.36

Feb 10, 2019

1.0.35

Feb 10, 2019

1.0.34

Feb 7, 2019

1.0.33

Feb 7, 2019

1.0.32

Feb 5, 2019

1.0.31

Feb 4, 2019

1.0.30

Jan 7, 2019

1.0.29

Jan 7, 2019

1.0.27

Nov 5, 2018

1.0.26

Nov 5, 2018

1.0.25

Nov 4, 2018

1.0.24

Nov 4, 2018

1.0.23

Nov 4, 2018

1.0.22

Nov 4, 2018

1.0.21

Nov 4, 2018

1.0.20

Oct 29, 2018

1.0.19

Oct 28, 2018

1.0.18

Oct 28, 2018

1.0.17

Oct 28, 2018

1.0.16

Oct 25, 2018

1.0.15

Oct 25, 2018

1.0.14

Oct 24, 2018

1.0.13

Oct 24, 2018

1.0.12

Oct 22, 2018

1.0.11

Oct 11, 2018

1.0.10

Aug 21, 2018

1.0.9

Aug 14, 2018

1.0.8

Aug 14, 2018

1.0.7

Aug 13, 2018

1.0.6

Aug 12, 2018

1.0.5

Aug 12, 2018

1.0.4

Aug 9, 2018

1.0.3

Aug 9, 2018

1.0.2

Jul 5, 2018

1.0.1

Jun 27, 2018

1.0.0

Jun 27, 2018

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