Snakemake pipeline for Mars-seq and RNA-seq.
Project description
Python version
This project is currently using Python 2.7
Installation
It is recommended to use virtualenv to create a clean python environment.
To install ngs-snakemake, use pip:
pip install bbcu.ngs-snakemake
Testing
To run unit tests, use:
nosetests
Or:
tox
This suite includes both unit and more time-consuming integration tests
Execution
The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here: https://bbcunit.atlassian.net/wiki/pages/viewpage.action?pageId=49053706
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bbcu.ngs-snakemake-1.0.10.tar.gz
(185.1 kB
view hashes)
Close
Hashes for bbcu.ngs-snakemake-1.0.10.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | b1e1f3f49354dfef39d0ce933b268f014081e5d0b3b8ad567d44c9dd0712cbfd |
|
MD5 | 8769af346acbd90149a347e3d57682f1 |
|
BLAKE2b-256 | 7a7624f7668ad3543c3adef3d9f524838365c43f83a90ef874c2262d8c0f1e0e |