Snakemake pipeline for Mars-seq and RNA-seq.
Project description
Python version
This project is currently using Python 2.7
Installation
It is recommended to use virtualenv to create a clean python environment.
To install ngs-snakemake, use pip:
pip install bbcu.ngs-snakemake
Testing
To run unit tests, use:
nosetests
Or:
tox
This suite includes both unit and more time-consuming integration tests
Execution
The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here: https://bbcunit.atlassian.net/wiki/pages/viewpage.action?pageId=49053706
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bbcu.ngs-snakemake-1.0.35.tar.gz
(200.5 kB
view hashes)
Close
Hashes for bbcu.ngs-snakemake-1.0.35.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 70412c5a38dff128252876a5160ef2bcbf23d5d882c6e4fc48e29520422965ba |
|
MD5 | 8ee5238599ca09511dec4d5c9a61e5b3 |
|
BLAKE2b-256 | 4d6989f7386c10b8a98ac26f4db692fffea780c4c69a5577e9040608644f3a1c |