Snakemake pipeline for Mars-seq and RNA-seq.
Project description
Python version
This project is currently using Python 2.7
Installation
It is recommended to use virtualenv to create a clean python environment.
To install ngs-snakemake, use pip:
pip install bbcu.ngs-snakemake
Testing
To run unit tests, use:
nosetests
Or:
tox
This suite includes both unit and more time-consuming integration tests
Execution
The main scripts shipped with this project is ngs-snakemake/*snakefile.txt. Instructions to running can be found here: https://bbcunit.atlassian.net/wiki/pages/viewpage.action?pageId=49053706
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bbcu.ngs-snakemake-1.0.61.tar.gz
(200.9 kB
view hashes)
Close
Hashes for bbcu.ngs-snakemake-1.0.61.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | c968dace70759649223b62d2a15c9e0682e00cbdeda362513bb641b6ec7aee9b |
|
MD5 | ef838407d7b484cd04a5023482ac7c85 |
|
BLAKE2b-256 | 14b65ca8e7c836a0028a1d497cb79e4812d61e619f0ef61073ab9453a0aab642 |