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Create SAV statistics. Run in python 2.7

Project description

Package: bbcu.reportIlluminaInterop

The package creates file with statistics of sequencing run (HiSeq or NextSeq machines of illumina).

The run command is:

run-sav-stat.py –input-folder INPUT_FOLDER –output-file OUTPUT_FILE

INPUT_FOLDER - Run folder of the machine. Need to looked like this: 180717_NB551168_0163_AHF727BGX7 OUPUT_FILE - Your name for the output file (with .txt extension).


Example of output files are under “examples” folder.

You can convert it to pdf with the commnad:

pandoc -o OUTPUT_FILE.pdf –variable=geometry:landscape OUTPUT_FILE


Developed by Refael Kohen (refael.kohen@gmail.com)

Bioinformatics unit at Life Sciences Core Facilities (LSCF),

Weizmann Institute of Science

Based on the Python package interop.

Project details


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