Detect head positions from MTT files
Project description
Detection of LED head stage based on MTT files, used by the BBO lab at MPI for Neurobiology of Behavior
Installation
Windows
- Install Anaconda
- Open Anaconda prompt via Start Menu
- Create conda environment using
conda env create -f conda env create -f https://raw.githubusercontent.com/bbo-lab/multitrackpy/master/environment.yml
Usage
- Switch to multitrackpy environment:
conda activate multitrackpy - Run the program with
python -m multitrackpy -h:
usage: __main__.py [-h] --mtt_file MTT_FILE --video_dir VIDEO_DIR
[--linedist_thres LINEDIST_THRES] [--corr_thres CORR_THRES]
[--led_thres LED_THRES] [--n_cpu N_CPU]
START_IDX END_IDX
__main__.py: error: the following arguments are required: START_IDX, END_IDX, --mtt_file, --video_dir
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