BarcelonaBeta + XNAT = bx
Project description
bx
BarcelonaBeta + XNAT = BX
Usage
bx <command> <subcommand> <resource_id> --config /path/to/.xnat.cfg --dest /tmp [--overwrite]
Examples:
bx nifti <resource_id>
- Download a NIfTI from a given sequence from an experiment/entire project.
bx spm12 volumes <resource_id>
- Download a table with grey/white matter and CSF volumes estimated from SPM12 segmentations
bx spm12 files <resource_id>
- Download SPM12 segmentations from an experiment/entire project
bx spm12 report <resource_id>
- Download a quality report from an SPM12 segmentation for an experiment/entire project
bx spm12 tests <resource_id>
- Download a table with results from automatic validation tests from an SPM12 segmentation for an experiment/entire project
bx freesurfer6 aseg <resource_id>
- Download a table with FreeSurfer
asegresults for an experiment/entire project
bx freesurfer6 aparc <resource_id>
- Download a table with FreeSurfer
aparcresults for an experiment/entire project
bx freesurfer6 hippoSfVolumes <resource_id>
- Download a table with FreeSurfer
hippoSfVolumesresults for an experiment/entire project
bx freesurfer6 files <resource_id>
- Download FreeSurfer6 segmentations from an experiment/entire project
bx mrdates <resource_id>
- Download a table with acquisition dates from an experiment/entire project
Dependencies
Requires the bbrc branch of pyxnat.
Install
pip install bbrc-bx
Development
Please contact us for details on how to contribute.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bbrc-bx-0.0.9.4.tar.gz
(10.4 kB
view details)
File details
Details for the file bbrc-bx-0.0.9.4.tar.gz.
File metadata
- Download URL: bbrc-bx-0.0.9.4.tar.gz
- Upload date:
- Size: 10.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.12.1 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.7.3 requests-toolbelt/0.9.1 tqdm/4.30.0 CPython/3.6.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
75a1307bdb6edb330876d14b9111440477033be3acedc79e374f2c7934d328ce
|
|
| MD5 |
e85d791da80690a83a6b96930d3fe467
|
|
| BLAKE2b-256 |
b7b0863e29d63eadc319733e8e849613829d05aaa3ebe66918671a4e5ef069c9
|
