BarcelonaBeta + XNAT = bx
Project description
bx
BarcelonaBeta + XNAT = BX
Example:
Usage
bx <command> <subcommand> <resource_id> --config /path/to/.xnat.cfg --dest /tmp [--overwrite]
Commands:
bx nifti <resource_id>
- Download a NIfTI from a given sequence from an experiment/entire project.
bx spm12 volumes <resource_id>
- Download a table with grey/white matter and CSF volumes estimated from SPM12 segmentations
bx spm12 files <resource_id>
- Download SPM12 segmentations from an experiment/entire project
bx spm12 report <resource_id>
- Download a quality report from an SPM12 segmentation for an experiment/entire project
bx spm12 tests <resource_id>
- Download a table with results from automatic validation tests from an SPM12 segmentation for an experiment/entire project
bx freesurfer6 aseg <resource_id>
- Download a table with FreeSurfer
asegresults for an experiment/entire project
bx freesurfer6 aparc <resource_id>
- Download a table with FreeSurfer
aparcresults for an experiment/entire project
bx freesurfer6 hippoSfVolumes <resource_id>
- Download a table with FreeSurfer
hippoSfVolumesresults for an experiment/entire project
bx freesurfer6 files <resource_id>
- Download FreeSurfer6 segmentations from an experiment/entire project
bx mrdates <resource_id>
- Download a table with acquisition dates from an experiment/entire project
Dependencies
Requires the bbrc branch of pyxnat.
Install
pip install bbrc-bx
Development
Please contact us for details on how to contribute.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bbrc-bx-0.1.0.2.tar.gz
(10.1 kB
view details)
File details
Details for the file bbrc-bx-0.1.0.2.tar.gz.
File metadata
- Download URL: bbrc-bx-0.1.0.2.tar.gz
- Upload date:
- Size: 10.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.8.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.6.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
83f5d01ac5544df9f8c3c24bc593f28886732806c52f8d15de144ab00d7da78b
|
|
| MD5 |
5dd676a99c6953b1207c8ee3cd97af9e
|
|
| BLAKE2b-256 |
2fc181d2080eb95ef9b17cbc958252082dea1e3f74b518b20592f3f73225b6b9
|
