BarcelonaBeta + XNAT = bx
Project description
bx
BarcelonaBeta + XNAT = BX
Example:
Usage
bx <command> <subcommand> <resource_id> --config /path/to/.xnat.cfg --dest /tmp [--overwrite]
Commands:
bx nifti <resource_id>
- Download a NIfTI from a given sequence from an experiment/entire project.
bx spm12 volumes <resource_id>
- Download a table with grey/white matter and CSF volumes estimated from SPM12 segmentations
bx spm12 files <resource_id>
- Download SPM12 segmentations from an experiment/entire project
bx spm12 report <resource_id>
- Download a quality report from an SPM12 segmentation for an experiment/entire project
bx spm12 tests <resource_id>
- Download a table with results from automatic validation tests from an SPM12 segmentation for an experiment/entire project
bx freesurfer6 aseg <resource_id>
- Download a table with FreeSurfer
asegresults for an experiment/entire project
bx freesurfer6 aparc <resource_id>
- Download a table with FreeSurfer
aparcresults for an experiment/entire project
bx freesurfer6 hippoSfVolumes <resource_id>
- Download a table with FreeSurfer
hippoSfVolumesresults for an experiment/entire project
bx freesurfer6 files <resource_id>
- Download FreeSurfer6 segmentations from an experiment/entire project
bx mrdates <resource_id>
- Download a table with acquisition dates from an experiment/entire project
Dependencies
Requires the bbrc branch of pyxnat.
Install
pip install bbrc-bx
Development
Please contact us for details on how to contribute.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bbrc-bx-0.1.0.tar.gz
(10.9 kB
view details)
File details
Details for the file bbrc-bx-0.1.0.tar.gz.
File metadata
- Download URL: bbrc-bx-0.1.0.tar.gz
- Upload date:
- Size: 10.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.12.1 pkginfo/1.5.0.1 requests/2.21.0 setuptools/40.7.3 requests-toolbelt/0.9.1 tqdm/4.30.0 CPython/3.6.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
c0d389a342f31916f8cd4c30f1325d79955ea8b3793c986eefb831afca758b3e
|
|
| MD5 |
9541f8960963131810fcdabe1faf312f
|
|
| BLAKE2b-256 |
d050f55ccf4340ec3d34cec2c9ba78411c45476d40f061bdba6a47a3779d107a
|
