Project description

bcl2fq-local

A bcl2fastq wrapper

Usage

usage:  bcl2fq-local -i <seq_dir> -o <ou_dir>

optional arguments:
    --sample-sheet Path  Using custom sample sheet file
    --mismatch N         Mismatch for barcode, default: 1
    --process N          Process number for demultiplexing and processing
    --io-process N       Process number for reading and writing
    --binpath   Path     Bcl2fastq binary file path, default: /usr/local/bin/bcl2fastq
    --cmd-only           Only print the cmd without running it

Project details

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Development Status
- 4 - Beta
Environment
- Console
Intended Audience
- Developers
- System Administrators
License
- OSI Approved :: MIT License
Operating System
- POSIX :: Linux
Programming Language
- Python
- Python :: 3

Release history Release notifications | RSS feed

0.2.0

Jul 13, 2019

0.1.5

Jul 10, 2019

0.1.2

Mar 13, 2019

This version

0.1.1

Mar 13, 2019

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Source Distribution

bcl2fq-local-0.1.1.tar.gz (2.4 MB view hashes)

Uploaded Mar 13, 2019 Source

Built Distribution

bcl2fq_local-0.1.1-py3-none-any.whl (2.4 MB view hashes)

Uploaded Mar 13, 2019 Python 3

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