Converts primer.bed files to IDT ordering templates
Project description
bed2idt
Usage:
$ bed2idt [OPTIONS] COMMAND [ARGS]...
Options:
--version
: Shows the current bed2idt version.--install-completion
: Install completion for the current shell.--show-completion
: Show completion for the current shell, to copy it or customize the installation.--help
: Show this message and exit.
Commands:
plates
tubes
bed2idt plates
Usage:
$ bed2idt plates [OPTIONS] BEDFILE
Arguments:
BEDFILE
: The path to the bed file [required]
Options:
--output PATH
: The output location of the file. Defaults to output.xlsx [default: output.xlsx]--splitby [pool|ref|none]
: Should the primers be split across differant plate [default: pool]--fillby [rows|cols]
: How should the plate be filled [default: cols]--plateprefix TEXT
: The prefix used in naming sheets in the excel file [default: plate]--force / --no-force
: Override the output directory--randomise / --no-randomise
: Randomise the order of primers within a plate--help
: Show this message and exit.
bed2idt tubes
Usage:
$ bed2idt tubes [OPTIONS] BEDFILE
Arguments:
BEDFILE
: The path to the bed file [required]
Options:
--output PATH
: The output location of the file. Defaults to output.xlsx [default: output.xlsx]--scale [25nm|100nm|250nm|1um|5um|10um]
: The conc of the primers [default: 25nm]--purification [STD|PAGE|HPLC|IEHPLC|RNASE|DUALHPLC|PAGEHPLC]
: The purification of the primers [default: STD]--force / --no-force
: Override the output directory--help
: Show this message and exit.
Project details
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