BETSEE, the BioElectric Tissue Simulation Engine Environment.
BETSEE (BioElectric Tissue Simulation Engine Environment) is the open-source cross-platform graphical user interface (GUI) for BETSE, a finite volume simulator for 2D computational multiphysics problems in the life sciences – including electrodiffusion, electro-osmosis, galvanotaxis, voltage-gated ion channels, gene regulatory networks, and biochemical reaction networks (e.g., metabolism).
BETSEE is universally installable with either:
[Recommended] pip, the standard Python package manager:
pip3 install betsee
Anaconda, a third-party Python package manager:
conda config --add channels conda-forge conda install betsee
|||Globally replace all instances of the substring betse with betsee (e.g., pip3 install betsee rather than pip3 install betse) in these instructions, which technically refer to BETSE rather than BETSEE.|
- All Entypo+ icons distributed with BETSEE, kindly released under the permissive CC BY-SA 4.0 license by Daniel Bruce.
- All Noun Project icons distributed with BETSEE, kindly released under the permissive CC BY 3.0 license by various authors, including:
- All Open Iconic icons distributed with BETSEE, kindly released under the permissive MIT license.
Alexis Pietak and Michael Levin, 2016. Exploring instructive physiological signaling with the bioelectric tissue simulation engine (BETSE). (Supplement).  Frontiers in Bioengineering and Biotechnology, 4(55). https://doi.org/10.3389/fbioe.2016.00055
See also this list of BETSE-centric papers for additional material.
|||This article’s supplement extends the cursory theory presented by this article with a rigorous treatment of the mathematics, formalisms, and abstractions required to fully reproduce this work. If theoretical questions remain after completing the main article, please consult this supplement.|
BETSEE is currently independently financed as a volunteer open-source project. Prior grant funding sources include (in chronological order):
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