bibtools - 0.1

Retrieve papers and metadata from the command-line.

Intended for papers referenced in MedLine/PubMed.

Install

pip3 install bibtools-pkg

Use

Generic

Returns exact matches when using unique identifiers (PMID, DOI).

Fetch PubMed Central for open-access papers as well as Sci-Hub:

bibtools -i PMID # Single PMID or DOI

bibtools -i PMID1,PMID2 # Comma-separated PMIDs and/or DOIs

bibtools -i pmids.dat # List file of PMIDs (or DOIs), one per line

bibtools -i PMID -b # Generate bibtex from MedLine citation data

bibtools -i PMID -p /path/to/directory # With custom storage path. Default is current working directory

Examples

Working calls:

bibtools -i 25809265

bibtools -i 10.1016/j.bpj.2015.01.032

bibtools -i 25809265,10.1016/j.jmr.2007.04.002

bibtools -i 25809265,10.1016/j.jmr.2007.04.002 -b -c

Help

To show help:

bibtools -h

Which returns:

bibtools

https://github.com/synthaze/bibtools <florian.malard@gmail.com>

Usage:
  bibtools OPTION...

Options:
  -h, --help             show help
  -i, --input=STRING     comma-separated PMIDs or DOIs
  -l, --list=FILE        list of PMIDs or DOIs, one per line
  -p, --path=STRING      path where to write files
  -b, --bibtex           write bibtex files
  -c, --cite             print latex style TITLE~\cite{header}
  -a, --abstract         print latex style ABSTRACT~\cite{header}

Release files for bibtools-pkg 0.1.16

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for bibtools-pkg 0.1.16
File	Size	Uploaded
bibtools-pkg-0.1.16.tar.gz	18.9 kB	Feb 14, 2022	Details

Built distribution (wheel)

Table of built distributions (wheels) for bibtools-pkg 0.1.16
File	Interpreter	ABI	Platform	Reset
bibtools_pkg-0.1.16-py3-none-any.whl 19.8 kB Feb 14, 2022	Python 3	none	any	Details

Total release size: 38.7 kB

Release files / bibtools-pkg-0.1.16.tar.gz

Download URL	bibtools-pkg-0.1.16.tar.gz
Size	18.9 kB
Tags	Source
SHA-256 checksum How to use checksums	`f5ebed84f85086f8617996608abd024dc5cacb80ef3c026a5c89d25cf6633e70`
BLAKE2b-256 checksum How to use checksums	`9cb98e73511ad2d0bc05e49094b4952a6d43710e56458deae98c734861a600e9`
Upload date	Feb 14, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.62.3 importlib-metadata/4.11.0 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.10`

Release files / bibtools_pkg-0.1.16-py3-none-any.whl

Download URL	bibtools_pkg-0.1.16-py3-none-any.whl
Size	19.8 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`6b480fe4379ceac27bc85aca97404d3d2014af6a65b5f5798bd9bdbb5e133ac1`
BLAKE2b-256 checksum How to use checksums	`7cdc04b6b42f85e303b19eb561f5218954ad40fcf057f624c88bc77ccf4d6a49`
Upload date	Feb 14, 2022
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.27.1 requests-toolbelt/0.9.1 urllib3/1.26.8 tqdm/4.62.3 importlib-metadata/4.11.0 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.4 CPython/3.9.10`