bibtools-pkg 0.1.12

Utils for pubmed, scihub and bibtex

bibtools - 0.1

Retrieve papers and metadata from the command-line.

Intended for papers referenced in MedLine/PubMed.

Install

pip3 install bibtools-pkg

Use

Generic

Returns exact matches when using unique identifiers (PMID, DOI).

Fetch PubMed Central for open-access papers as well as Sci-Hub:

bibtools -i PMID # Single PMID or DOI

bibtools -i PMID1,PMID2 # Comma-separated PMIDs and/or DOIs

bibtools -i pmids.dat # List file of PMIDs (or DOIs), one per line

bibtools -i PMID -b # Generate bibtex from MedLine citation data

bibtools -i PMID -p /path/to/directory # With custom storage path. Default is current working directory

Examples

Working calls:

bibtools -i 25809265

bibtools -i 10.1016/j.bpj.2015.01.032

bibtools -i 25809265,10.1016/j.jmr.2007.04.002

bibtools -i 25809265,10.1016/j.jmr.2007.04.002 -b -c

Help

To show help:

bibtools -h

Which returns:

bibtools

https://github.com/synthaze/bibtools <[e-mail]>

Usage:
  bibtools OPTION...

Options:
  -h, --help             show help
  -i, --input=STRING     comma-separated PMIDs or DOIs
  -l, --list=FILE        list of PMIDs or DOIs, one per line
  -p, --path=STRING      path where to write files
  -b, --bibtex           write bibtex files
  -c, --cite             print latex style TITLE~\cite{header}