bigraph-schema 0.0.13

A serializable type schema for compositional systems biology

Bigraph-schema

Welcome to bigraph-schema – a library providing a serializable type schema for compositional systems biology simulations. This library is an integral component of the broader Process Bigraph project, which seeks to create an innovative framework for representing, simulating, and analyzing complex biological systems.

The goal of bigraph-schema is to support interoperability and extensibility across compositional modeling, facilitating seamless integration with existing and future modeling platforms. This is achieved by establishing a standardized and serializable schema for the complex, hierarchical, and multiscale nature of biological systems.

Installation

To install bigraph-schema, you can use pip:

pip install bigraph-schema

Getting Started

To get started with bigraph-schema, check out our resources:

• Demo notebook: An interactive Jupyter notebook providing a hands-on demonstration of the functionality of bigraph-schema.
• Bigraph Schema Basics Tutorial: A comprehensive tutorial covering the essential aspects of the bigraph-schema library. This resource will guide you through the core concepts and methods, helping you to master the basic operations.

License

Bigraph-schema is open-source software released under the Apache 2 License.