Classifier for ORganelle Genomes Inter alia

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  • License: Apache Software License, Other/Proprietary License (Apache Software License 2.0)
  • Author: Robert Turnbull
  • Tags metagenomic classifier, tiara, DNA, bioinformatics, fastai, pytorch, deep learning, command-line interface
  • Requires: Python >=3.8, <3.12
Classifiers

Project description

https://raw.githubusercontent.com/rbturnbull/corgi/main/docs/images/corgi-banner.svg

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Installation

The software can be installed using pip

pip install bio-corgi

To install the latest version from the repository, you can use this command:

pip install git+https://github.com/rbturnbull/corgi.git

Usage

To make predictions, run the corgi command line tool:

corgi --file <input seq file>

This will create a directory with the predictions in a CSV file and in fasta format.

For more information about the other options, see the help with:

corgi --help

For help on training a model with corgi, run:

corgi-train --help

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Project details

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Avatar for rturnbull from gravatar.com rturnbull

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Project links
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  • License: Apache Software License, Other/Proprietary License (Apache Software License 2.0)
  • Author: Robert Turnbull
  • Tags metagenomic classifier, tiara, DNA, bioinformatics, fastai, pytorch, deep learning, command-line interface
  • Requires: Python >=3.8, <3.12
Classifiers

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This version

0.4.0

0.2.2

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