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Subtype microbial genomes using SNV targeting k-mer subtyping schemes.

Project description

Includes schemes for Salmonella enterica spp. enterica serovar Heidelberg and Enteritidis subtyping. Developed by Geneviève Labbé, James Robertson, Peter Kruczkiewicz, Marisa Rankin, Matthew Gopez, Chad R. Laing, Philip Mabon, Kim Ziebell, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Marisa Rankin, Joanne MacKinnon, Roger Johnson, John H.E. Nash.

Home-page: https://github.com/phac-nml/bio_hansel Author: Peter Kruczkiewicz Author-email: peter.kruczkiewicz@gmail.com License: Apache v2.0 Description: UNKNOWN Keywords: Salmonella enterica Heidelberg Enteritidis SNP kmer subtyping Aho-Corasick Platform: UNKNOWN Classifier: Development Status :: 3 - Alpha Classifier: Environment :: Console Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) Classifier: Intended Audience :: Science/Research Classifier: Topic :: Scientific/Engineering Classifier: Topic :: Scientific/Engineering :: Bio-Informatics Classifier: Programming Language :: Python :: 3.5 Classifier: Programming Language :: Python :: 3.6 Classifier: Programming Language :: Python :: Implementation :: CPython Classifier: Operating System :: POSIX :: Linux Provides-Extra: test

Project details


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