Skip to main content

Subtype microbial genomes using SNV targeting k-mer subtyping schemes.

Project description

Includes schemes for Salmonella enterica spp. enterica serovar Heidelberg and Enteritidis subtyping. Developed by Geneviève Labbé, James Robertson, Peter Kruczkiewicz, Marisa Rankin, Matthew Gopez, Chad R. Laing, Philip Mabon, Kim Ziebell, Aleisha R. Reimer, Lorelee Tschetter, Gary Van Domselaar, Sadjia Bekal, Kimberley A. MacDonald, Linda Hoang, Linda Chui, Danielle Daignault, Durda Slavic, Frank Pollari, E. Jane Parmley, Philip Mabon, Elissa Giang, Lok Kan Lee, Jonathan Moffat, Marisa Rankin, Joanne MacKinnon, Roger Johnson, John H.E. Nash.

Home-page: Author: Peter Kruczkiewicz Author-email: License: Apache v2.0 Description: UNKNOWN Keywords: Salmonella enterica Heidelberg Enteritidis SNP kmer subtyping Aho-Corasick Platform: UNKNOWN Classifier: Development Status :: 3 - Alpha Classifier: Environment :: Console Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) Classifier: Intended Audience :: Science/Research Classifier: Topic :: Scientific/Engineering Classifier: Topic :: Scientific/Engineering :: Bio-Informatics Classifier: Programming Language :: Python :: 3.5 Classifier: Programming Language :: Python :: 3.6 Classifier: Programming Language :: Python :: Implementation :: CPython Classifier: Operating System :: POSIX :: Linux Provides-Extra: test

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for bio-hansel, version 2.1.0
Filename, size File type Python version Upload date Hashes
Filename, size bio_hansel-2.1.0.tar.gz (39.3 kB) File type Source Python version None Upload date Hashes View hashes

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page