bio2bel 0.4.2

A framework for converting biological data sources to BEL

Bio2BEL is a project aimed at bringing biological databases and other structured knowledge sources in a wide variety of schemata into the unified framework of the Biological Expression Language [1].

Two important places to look:

• How to make a Bio2BEL Repository

• How to use the CLI

Installation

Download the latest stable code from PyPI with:

$ python -m pip install bio2bel

or get the latest from GitHub with:

$ git clone https://github.com/bio2bel/bio2bel.git
$ cd bio2bel
$ python -m pip install -e .

or check the installation instructions.

Citation

If you find Bio2BEL useful for your work, please consider citing:

[1]

Hoyt, C. T., et al. (2019). Integration of Structured Biological Data Sources using Biological Expression Language. bioRxiv, 631812.