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A package for parsing and storing Entrez Gene

Project description

This package downloads, parses, and stores the Entrez Gene and HomoloGene databases then provides utilities for converting to BEL.

Installation Current version on PyPI Stable Supported Python Versions MIT License

bio2bel_entrez can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_entrez

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/entrez.git@master

Setup

Entrez can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_entrez
>>> entrez_manager = bio2bel_entrez.Manager()
>>> entrez_manager.populate()

Command Line Utility

bio2bel_entrez populate

Citations

Project details


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Files for bio2bel-entrez, version 0.2.2
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