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A package for parsing and storing Entrez Gene

Project description

This package downloads, parses, and stores the Entrez Gene and HomoloGene databases then provides utilities for converting to BEL.

Installation Current version on PyPI Stable Supported Python Versions MIT License

bio2bel_entrez can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_entrez

or from the latest code on GitHub with:

$ python3 -m pip install git+


Entrez can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_entrez
>>> entrez_manager = bio2bel_entrez.Manager()
>>> entrez_manager.populate()

Command Line Utility

bio2bel_entrez populate


Project details

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Filename, size & hash SHA256 hash help File type Python version Upload date
bio2bel_entrez-0.2.1-py3-none-any.whl (14.8 kB) Copy SHA256 hash SHA256 Wheel py3
bio2bel_entrez-0.2.1.tar.gz (18.2 kB) Copy SHA256 hash SHA256 Source None

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