A package for parsing and storing Entrez Gene
Project description
This package downloads, parses, and stores the Entrez Gene and HomoloGene databases then provides utilities for converting to BEL.
Installation
bio2bel_entrez can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_entrez
or from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/entrez.git@master
Setup
Entrez can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
Python REPL
>>> import bio2bel_entrez
>>> entrez_manager = bio2bel_entrez.Manager()
>>> entrez_manager.populate()
Command Line Utility
bio2bel_entrez populate
Citations
Maglott, D., et al. (2011). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research, 39(Database issue), D52–D57.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bio2bel_entrez-0.2.1.dev0.tar.gz
(18.2 kB
view hashes)
Built Distribution
Close
Hashes for bio2bel_entrez-0.2.1.dev0.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5c6cc79f257ba844b370e7f32151c8d8ba4368db5a6492cb7e21cc44ae53e49a |
|
MD5 | 49920828395c66b3469cb04e43013338 |
|
BLAKE2b-256 | 88a02698c3494af0f9d6bf285287aa94eecd5fa105db760a5ce7bf6d317ce949 |
Close
Hashes for bio2bel_entrez-0.2.1.dev0-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 928df6c4752a4d3fb8b4b2c724a2e61619a58c09c1b7dd9f5e9db787892015f2 |
|
MD5 | 6d2eaea1c76bf1a6a7981805185bbd12 |
|
BLAKE2b-256 | 13c0ba2c0323aa5352fcc38034526cc06429650e58d4cde959c6f2aa5e0c2d63 |