Bio2BEL ExPASy

This repository downloads and parses the enzyme classes from the ExPASy ENZYME database

Installation

bio2bel_expasy can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_expasy

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/expasy.git@master

ExPASy can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

>>> import bio2bel_expasy
>>> expasy_manager = bio2bel_expasy.Manager()
>>> expasy_manager.populate()

bio2bel_expasy populate

To enrich the proteins in a BEL Graph with their enzyme classes, use:

>>> from bio2bel_expasy import enrich_proteins
>>> graph = ... # get a BEL graph
>>> enrich_proteins(graph)

Gasteiger, E., et al. (2003). ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research, 31(13), 3784–8.

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution for bio2bel-expasy 0.2.0
File	Size	Uploaded
bio2bel_expasy-0.2.0.tar.gz	20.4 kB	Nov 15, 2018	Details

Table of built distributions (wheels) for bio2bel-expasy 0.2.0
File	Interpreter	ABI	Platform	Reset
bio2bel_expasy-0.2.0-py3-none-any.whl 15.6 kB Nov 15, 2018	Python 3	none	any	Details

Total release size: 35.9 kB

Download URL	bio2bel_expasy-0.2.0.tar.gz
Size	20.4 kB
Tags	Source
SHA-256 checksum How to use checksums	`5f2038b05839ff754010c5bb98a47ae65f1faaaaa069d747775f144dc9678b24`
BLAKE2b-256 checksum How to use checksums	`29399ae1a846c1eeacd81506e55b0332ef7b39189a4190c3113f551fc433a18e`
Upload date	Nov 15, 2018
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.7.0`

Download URL	bio2bel_expasy-0.2.0-py3-none-any.whl
Size	15.6 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`18005432aaea3ed2d64156fe2ae3d5785153973341d7b0eb527036fd15a4eb93`
BLAKE2b-256 checksum How to use checksums	`e20a5c63ab94d155734fa5914bc5cd8e33a7abaae35269827f060854746814c5`
Upload date	Nov 15, 2018
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/1.12.1 pkginfo/1.4.2 requests/2.20.1 setuptools/40.6.2 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.7.0`