A package for parsing and storing the ExPASy Enzyme Database
This repository downloads and parses the enzyme classes from the ExPASy ENZYME database
bio2bel_expasy can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_expasy
or from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/expasy.git@master
or check the installation instructions.
ExPASy can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
>>> import bio2bel_expasy >>> expasy_manager = bio2bel_expasy.Manager() >>> expasy_manager.populate()
Command Line Utility
To enrich the proteins in a BEL Graph with their enzyme classes, use:
>>> from bio2bel_expasy import enrich_proteins >>> graph = ... # get a BEL graph >>> enrich_proteins(graph)
Gasteiger, E., et al. (2003). ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research, 31(13), 3784–8.
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