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A package for parsing and storing the ExPASy Enzyme Database

Project description

This repository downloads and parses the enzyme classes from the ExPASy ENZYME database

Installation Current version on PyPI Stable Supported Python Versions Apache 2.0 License

Download the latest stable code from PyPI with:

$ python3 -m pip install bio2bel_expasy

or check the installation instructions.

Command Line Interface

To output the hierarchy of enzyme classes, type the following in the command line:

bio2bel_expasy write -f ~/Desktop/ec.bel

Programmatic Interface

To enrich the proteins in a BEL Graph with their enzyme classes, use:

>>> from bio2bel_expasy import enrich_proteins
>>> graph = ... # get a BEL graph
>>> enrich_proteins(graph)

Citations

Gasteiger, E., et al. (2003). ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research, 31(13), 3784–8.

Project details


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