Skip to main content

A package for parsing and storing the ExPASy Enzyme Database

Project description

This repository downloads and parses the enzyme classes from the ExPASy ENZYME database

Installation Current version on PyPI Stable Supported Python Versions Apache 2.0 License

Download the latest stable code from PyPI with:

$ python3 -m pip install bio2bel_expasy

or check the installation instructions.

Command Line Interface

To output the hierarchy of enzyme classes, type the following in the command line:

bio2bel_expasy write -f ~/Desktop/ec.bel

Programmatic Interface

To enrich the proteins in a BEL Graph with their enzyme classes, use:

>>> from bio2bel_expasy import enrich_proteins
>>> graph = ... # get a BEL graph
>>> enrich_proteins(graph)


Gasteiger, E., et al. (2003). ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Research, 31(13), 3784–8.

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for bio2bel-expasy, version 0.1.1
Filename, size File type Python version Upload date Hashes
Filename, size bio2bel_expasy-0.1.1-py3-none-any.whl (15.9 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size bio2bel_expasy-0.1.1.tar.gz (19.6 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page