A package for converting InterPro to BEL
Converts the InterPro protein families, domains, and other classes to ontological relations in BEL.
bio2bel_interpro can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_interpro
or from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/interpro.git@master
InterPro can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
>>> import bio2bel_interpro >>> interpro_manager = bio2bel_interpro.Manager() >>> interpro_manager.populate()
Command Line Utility
To enrich the proteins in a BEL Graph with their InterPro entries (families, domains, sites, etc.) , use:
>>> from bio2bel_interpro import enrich_proteins >>> graph = ... # get a BEL graph >>> enrich_proteins(graph)
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Hashes for bio2bel_interpro-0.2.1-py3-none-any.whl