Converts the InterPro protein families, domains, and other classes to ontological relations in BEL.
Installation 
bio2bel_interpro can be installed easily from PyPI with the following code in your favorite terminal:
$ python3 -m pip install bio2bel_interproor from the latest code on GitHub with:
$ python3 -m pip install git+https://github.com/bio2bel/interpro.git@masterSetup
InterPro can be downloaded and populated from either the Python REPL or the automatically installed command line utility.
Python REPL
>>> import bio2bel_interpro
>>> interpro_manager = bio2bel_interpro.Manager()
>>> interpro_manager.populate()Command Line Utility
bio2bel_interpro populateProgrammatic Interface
To enrich the proteins in a BEL Graph with their InterPro entries (families, domains, sites, etc.) , use:
>>> from bio2bel_interpro import enrich_proteins >>> graph = ... # get a BEL graph >>> enrich_proteins(graph)
1 maintainer
Release files for bio2bel-interpro 0.2.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bio2bel_interpro-0.2.1.tar.gz | 19.4 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bio2bel_interpro-0.2.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 34.8 kB
Release files / bio2bel_interpro-0.2.1.tar.gz
| Download URL | bio2bel_interpro-0.2.1.tar.gz |
|---|---|
| Size | 19.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/41.0.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.3
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Release files / bio2bel_interpro-0.2.1-py3-none-any.whl
| Download URL | bio2bel_interpro-0.2.1-py3-none-any.whl |
|---|---|
| Size | 15.4 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.21.0 setuptools/41.0.0 requests-toolbelt/0.9.1 tqdm/4.31.1 CPython/3.7.3
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