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A package for converting Kegg to BEL

Project description

This package converts KEGG to BEL. So far, importing gene protein relationships into the database and exporting the pathway namespace has been implemented.

Installation

This code can be installed with pip3 install git+https://github.com/bio2bel/kegg.git

Creating a Local Copy of the Namespace

A BEL namespace can be generated with python3 -m bio2bel_kegg write -o ~/Downloads/kegg.belns

Citation

  • Kanehisa, Furumichi, M., Tanabe, M., Sato, Y., and Morishima, K.; KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Res. 45, D353-D361 (2017).
  • Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M.; KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462 (2016).
  • Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000).

Project details


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Files for bio2bel-kegg, version 0.0.2
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