bio2bel-reactome 0.0.1

A package for converting Reactome to BEL

This package converts Reactome to BEL. So far, exporting the pathway namespace has been implemented.

Installation

This code can be installed with pip3 install git+https://github.com/bio2bel/reactome.git

Note that the two following resources should be installed and loaded in order to fully populate the tables of the database:

• Bio2BEL CHEBI

• Bio2BEL HGNC

These two resources will be installed together with this package and can be quickly loaded by running the following commands:

1. python3 -m bio2bel_hgnc populate

2. python3 -m bio2bel_chebi populate

Creating a Local Copy of the Namespace

A BEL namespace can be generated with python3 -m bio2bel_reactome write -o ~/Downloads/reactome.belns

Citation

• Fabregat, Antonio et al. “The Reactome Pathway Knowledgebase.” Nucleic Acids Research 44.Database issue (2016): D481–D487. PMC. Web. 6 Oct. 2017.

• Croft, David et al. “The Reactome Pathway Knowledgebase.” Nucleic Acids Research 42.Database issue (2014): D472–D477. PMC. Web. 6 Oct. 2017.