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A package for converting Wikipathways to BEL

Project description

This package converts WikiPathways to BEL. At the moment, the package parse, store, and export to a namespace all Homo sapiens pathways. Furthermore, a small wrapper around the database allows to explore through a Flask-admin interface the database and perform simple queries.


This code can be installed with pip3 install git+


  • Slenter, D.N., et al WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research Nucleic Acids Research, (2017)
  • Kutmon, M., et al. WikiPathways: capturing the full diversity of pathway knowledge Nucl. Acids Res., 44, D488-D494 (2016) doi:10.1093/nar/gkv1024
  • Kelder, T., et al. WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7

Project details

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bio2bel_wikipathways-0.0.1.tar.gz (8.9 kB) Copy SHA256 hash SHA256 Source None

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