Biobb_disgenet is a complete code wrapper to interrogate the DisGeNET database REST API.
Project description
biobb_disgenet
Introduction
Biobb_template is a complete code template to promote and facilitate the creation of new Biobbs by the community. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation.
Version
v3.0.0 2021.3
Installation
If you have no experience with anaconda, please first take a look to the New with anaconda? section of the official documentation.
Download repository
Although the biobb_template repository is available at GitHub and thus you can clone it, we strongly recommend you to [download it compressed]and start your new project from scratch.
Activate the env
Since the Bioconda package is not ready, after the download of the directory is necessary to set up the conda environment for the right functioning:
conda create conda_env/environment.yml
conda activate biobb_disgenet
If the package is not working, set it up manually:
python setup.py build
python setup.py install
Binary paths configuration
Additionally, it's recommendable to configure binary paths in your environment in order to ease the command line execution. More info about this subject in the Binary path configuration section of the official documentation.
Documentation
Click here to find the API Documentation example for this template and here for Command Line documentation.
And here you can find the full documentation about how to build a new BioExcel building block from scratch.
Copyright & Licensing
This software has been developed in the MMB group at the BSC & IRB for the European BioExcel, funded by the European Commission (EU H2020 823830, EU H2020 675728).
- (c) 2015-2020 Barcelona Supercomputing Center
- (c) 2015-2020 Institute for Research in Biomedicine
Licensed under the Apache License 2.0, see the file LICENSE for details.
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