Biobertology
Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel.
To load the model:
from biobertology import get_biobert, get_tokenizer
biobert = get_biobert(model_dir=None, download=True)
tokenizer = get_tokenizer()
Example of fine tuning biobert here.
How was it converted to pytorch?
Model weights have been downloaded from here and converted
by following the commands described here.pytorch
Specifically, using the command:
pytorch_transformers bert biobert_v1.1_pubmed/model.ckpt-1000000 biobert_v1.1_pubmed/bert_config.json biobert_v1.1_pubmed/pytorch_model.bin
followed by the renaming of the config file:
mv biobert_v1.1_pubmed/bert_config.json biobert_v1.1_pubmed/config.json
all of the other files inside the original weights file have been deleted.
1 maintainer
Metadata
1 maintainer
Release files for biobert-pytorch 0.9
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
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| biobert-pytorch-0.9.tar.gz | 2.7 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| biobert_pytorch-0.9-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 7.0 kB
Release files / biobert-pytorch-0.9.tar.gz
| Download URL | biobert-pytorch-0.9.tar.gz |
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| Size | 2.7 kB |
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Release files / biobert_pytorch-0.9-py3-none-any.whl
| Download URL | biobert_pytorch-0.9-py3-none-any.whl |
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| Size | 4.3 kB |
| Tags | Python 3 |
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