Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel.

Project description

Biobertology

Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel.

To load the model:

from biobertology import get_biobert, get_tokenizer

biobert = get_biobert(model_dir=None, download=True)
tokenizer = get_tokenizer()

Example of fine tuning biobert here.

Model weights have been downloaded from here and converted

by following the commands described here.pytorch

Specifically, using the command:

pytorch_transformers bert biobert_v1.1_pubmed/model.ckpt-1000000 biobert_v1.1_pubmed/bert_config.json biobert_v1.1_pubmed/pytorch_model.bin

followed by the renaming of the config file:

mv biobert_v1.1_pubmed/bert_config.json biobert_v1.1_pubmed/config.json

all of the other files inside the original weights file have been deleted.

This version

0.9

Aug 3, 2020

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Uploaded Aug 3, 2020 Source

Uploaded Aug 3, 2020 Python 3

Details for the file biobert-pytorch-0.9.tar.gz.

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Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/49.2.1 requests-toolbelt/0.9.1 tqdm/4.48.0 CPython/3.6.7