A library for biological computing works
Project description
Biobrary
Introduction
Biobrary is a python library, which contain data and methods for biological computation.
Requirement
-
ete3
pyqt5 is needed by ete3. you maybe need install it manually.
Install
- using pip
pip install biobrary --user
- manally install
git clone https://github.com/benjaminfang/biobrary.git
cd biobrary
mv biobrary $PYTHONPATH
where PYTHONPATH is python library searching path.
Usage
import biobrary
dir(biobrary)
Data and Method
-
bioparse
-
FASTA
class for fasta file.
-
GTF
class for gtf file.
-
GFF
class for gff file.
-
-
biocondon
-
amino_acids_mw
-
tree
-
CircleNode
class for phylogenic tree traverse and operations. And divide tree to circle node according to phylogenic distance.
-
Project details
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