Biobricks automates bioinformatics data.
Project description
BioBricks
BioBricks makes loading data from biological datasets easy.
pipx install biobricks
initialize
To get started configure biobricks with a path for bricks and a biobricks.ai token:
biobricks configure
> Choose path to store bricks: <input a local path>
> Input a token from biobricks.ai/token: <this is your access token>
Install and Use Bricks
To install a brick the command line command:
> biobricks install tox21
You can then use the brick in python as below:
import biobricks as bb
bb.assets('tox21') # get the paths for the 'tox21' brick
To list the bricks currently available visit status.biobricks.ai
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