convert between bioinformatics formats
Project description
Bioconvert is a project to facilitate the interconversion of life science data from one format to another.
- note:
Bioconvert is tested with Travis for the following Python version: 3.5 and 3.6. Python 2 won’t be provided.
- contributions:
Want to add a convertor ? Please join https://github.com/bioconvert/bioconvert/issues/1
- issues:
Installation
In order to install bioconvert, you can use pip:
pip install bioconvert
We also provide releases on bioconda (http://bioconda.github.io/):
conda install bioconvert
and Singularity container are available. See http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for details.
Usage
bioconvert fastq2fasta input.fastq output.fasta bioconvert gz2dsrc input.fq.gz output.dsrc2 bioconvert bam2bed input.bam output.bed bioconvert --help
Available Converters
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bioconvert-0.3.0.tar.gz
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