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fluff : exploratory analysis and visualization of high-throughput sequencing data

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# fluff [![DOI](https://zenodo.org/badge/4346865.svg)](https://zenodo.org/badge/latestdoi/4346865) [![bioconda-badge](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io) [![PyPI version](https://badge.fury.io/py/biofluff.svg)](https://badge.fury.io/py/biofluff) [![Build Status](https://travis-ci.org/simonvh/fluff.svg?branch=master)](https://travis-ci.org/simonvh/fluff) [![Code Health](https://landscape.io/github/simonvh/fluff/master/landscape.svg?style=flat)](https://landscape.io/github/simonvh/fluff/master)

See [full fluff documentation](http://fluff.readthedocs.org/) for detailed installation instructions and usage examples.

## Quick Installation

Please note: from version 3.0 on, fluff only works on Python 3.6+ and Python 2.x will no longer be supported. For a Python 2 version you can install fluff 2.1.4. Keep in mind that most scientific Python software will stop supporting Python 2 in 2020: https://python3statement.org/.

The most straightforward way to install fluff is with [conda](https://docs.continuum.io/anaconda) using the [bioconda](https://bioconda.github.io/) channel.

If you have not used bioconda yet, first set up the necessary channels (in this order):

` $ conda config --add channels defaults $ conda config --add channels bioconda $ conda config --add channels conda-forge `

Now you can install fluff:

$ conda install biofluff

## Quick Usage

See the quick examples in the [Usage](http://fluff.readthedocs.io/en/latest/usage.html) section.

## Citing

If you find fluff useful, please cite:

Georgiou G, van Heeringen SJ. (2016) fluff: exploratory analysis and visualization of high-throughput sequencing data. PeerJ 4:e2209 [doi: 10.7717/peerj.2209](https://doi.org/10.7717/peerj.2209).

## Help

## Contributors

  • Simon van Heeringen (@simonvh)
  • Georgios Georgiou (@georgeg9)
  • Zhuoqing Fang (@BioNinja)

## License

This module is licensed under the terms of the [MIT license](https://opensource.org/licenses/MIT).

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