bioimage - library to make working with biomedical images more comfortable
Project description
bioimage
Library for convenient handling of bioimages
Contains the following modules:
io
Convenient file management, uses pims and pycomfort under the hood. For example:
- load_bio_image(from_file: Path) that allows loading microscopy images
- load_frame(from_file: Path): that loads first frame of the microscopy image from the system path
filters
Useful filters to process images. For example:
- rolling ball filter to fix some issues on the background
- local_contrast filter that can be used together with thresholding to find boundaries of the objects
- gray2color that deals with fluorescent images
- glowing - for dealing with comparisons between normal and fluorescent images
comparisons
When you need to compare multiple conditions For example:
- show_images that displays images from the whole folder as a grid plot
- folder_to_conditions that allows splitting images in the folder to multiple conditions based on their namings
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
bioimage-0.0.11.tar.gz
(7.9 kB
view hashes)
Built Distribution
Close
Hashes for bioimage-0.0.11-py2.py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 896b2c221bd2812e6edc2527907ae5b3aebcd984e141d75f5894c021d0040929 |
|
MD5 | 9a117c53f885d92550de535161ecf620 |
|
BLAKE2b-256 | 6502e0870039d51c0c5d4f36fe88c29ea497bb522c034cfac4dc1722dcde6dc5 |