BioKEEN (KnowlEdge EmbeddiNgs) is a package for training and evaluating biological knowledge graph embeddings
Project description
BioKEEN is a package for training and evaluating biological knowledge graph embeddings built on PyKEEN.
Currently, the framework is under heavy development.
Installation
BioKEEN can be installed with the following commands:
python3 -m pip install git+https://github.com/SmartDataAnalytics/BioKEEN.git@masteror in editable mode with:
$ git clone https://github.com/SmartDataAnalytics/BioKEEN.git biokeen
$ cd biokeen
$ python3 -m pip install -e .How to Use
To start BioKEEN, please run the following command:
biokeenor alternatively:
python3 -m biokeenthen the command line interface will assist you to configure your experiments.
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