Skip to main content

BioMAJ daemon service

Project description

# About

Microservice to manage biomaj, acts as a frontend to receive biomaj-cli commands and execute operations

Needs mongo and redis

# Development

flake8 –ignore E501 biomaj_daemon

# Run

## Message consumer:

export BIOMAJ_CONFIG=path_to_config.yml python bin/

## Web server

If package is installed via pip, you need a file named containing somehwhere on local server:

def worker_exit(server, worker):

from prometheus_client import multiprocess multiprocess.mark_process_dead(

If you cloned the repository and installed it via python install, just refer to the in the cloned repository.

export BIOMAJ_CONFIG=path_to_config.yml rm -rf ..path_to/prometheus-multiproc mkdir -p ..path_to/prometheus-multiproc export prometheus_multiproc_dir=..path_to/prometheus-multiproc gunicorn -c ../path_to/ biomaj_daemon.daemon.biomaj_daemon_web:app

Web processes should be behind a proxy/load balancer, API base url /api/daemon

## API

For authentication, add api key to HTTP header X-API-KEY

For admin only, operations, add to config.yml

  • admin_user_id

TO use API, some operations are limited to


After migration checks, update db_schema to current version


Add –history option Catch SIGTERM to cancel bank update for SIGKILL


Fake version for Pypi re-upload


Allow per service local_endpoint definition Add –stats option Modify –version option to get all module details Add REST API to daemon (/api/daemon/…)


Add to python scripts for install with package


Disable daemon web service logging


Fix tail endpoint syntax


Fix #1 remove debug log Fix #2 log dir not removed with –remove-all if proxy option not set


Fix #78, for multiple banks update in monolithic config, if one fails, next banks are not updated Add /api/daemon/bank/x/log[/y] endpoint to get last bank session log file


Add whatsup support for non proxy config Skip bank config with errors


Fix logging for monolithic setup Add whatsup option Fix prometheus stats


Fix for python 2.x


Fix status page with other services Add missing README in package


Fix missing parameters


Move options to management to utils for reuse Fix –about-me


Micro service to manage biomaj updates

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distribution

biomaj_daemon-3.0.16-py2.py3-none-any.whl (20.3 kB view hashes)

Uploaded Python 2 Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page