Skip to main content
This is a pre-production deployment of Warehouse. Changes made here affect the production instance of PyPI (
Help us improve Python packaging - Donate today!

BioMAJ process service

Project Description

# About

Microservice to manage the process execution of biomaj.

A protobuf interface is available in biomaj_process/message/ to exchange messages between BioMAJ and the download service. Messages go through RabbitMQ (to be installed).

# Protobuf

To compile protobuf, in biomaj_process/message:

protoc –python_out=. message.proto

# Development

flake8 biomaj_process

# Run

## Message consumer: export BIOMAJ_CONFIG=path_to_config.yml python bin/

## Web server

If package is installed via pip, you need a file named containing somehwhere on local server:

def worker_exit(server, worker):
from prometheus_client import multiprocess multiprocess.mark_process_dead(

If you cloned the repository and installed it via python install, just refer to the in the cloned repository.

export BIOMAJ_CONFIG=path_to_config.yml rm -rf ..path_to/godocker-prometheus-multiproc mkdir -p ..path_to/godocker-prometheus-multiproc export prometheus_multiproc_dir=..path_to/godocker-prometheus-multiproc gunicorn biomaj_download.biomaj_process_web:app

Web processes should be behind a proxy/load balancer, API base url /api/download

fix case if process desc or type is missing in bank properties
disable web thread logging
retry in case of contact failure with proxy
for docker, restrict directory to bank directory and dependencies add host in prometheus stats
fix prometheus + gunicorn multi process add consul supervision
add logging info execute docker processes in biomaj micro service
bug fixes
move process management out of biomaj main package
Release History

Release History

This version
History Node


History Node


History Node


History Node


History Node


History Node


History Node


History Node


Download Files

Download Files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
biomaj_process-3.0.7-py2.py3-none-any.whl (16.2 kB) Copy SHA256 Checksum SHA256 py2.py3 Wheel Aug 16, 2017

Supported By

WebFaction WebFaction Technical Writing Elastic Elastic Search Pingdom Pingdom Monitoring Dyn Dyn DNS Sentry Sentry Error Logging CloudAMQP CloudAMQP RabbitMQ Heroku Heroku PaaS Kabu Creative Kabu Creative UX & Design Fastly Fastly CDN DigiCert DigiCert EV Certificate Rackspace Rackspace Cloud Servers DreamHost DreamHost Log Hosting